Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_M17
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.8  
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    26   5.0  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    25   6.5  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 331 T*SHPEPS*TFPLPPTTKFIPMSNISNYP 245
           T S P P+ +FP   TT FI  S++S+ P
Sbjct: 688 TVSTPPPTTSFPSTFTTSFITSSSLSSIP 716


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
 Frame = -1

Query: 298 PLPPTTKFIPMSNIS-----NYPYDCLVNFASSPCMLRSS 194
           P+P TT   P SN++     NYPY    + +SS  +  S+
Sbjct: 51  PVPGTTTIYPTSNVASNTSENYPYTGSKSLSSSSILSNST 90


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 31  IYTIFTIFLSWKSVRADCGVVSKKDWGGLSPVHIEY 138
           I+T + +  S+ S+R        K WGG   V+I Y
Sbjct: 564 IFTSYVLIYSFASIRISSFYSPAKVWGGAFLVYILY 599


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,736,402
Number of Sequences: 5004
Number of extensions: 58889
Number of successful extensions: 151
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)