Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_M17
(610 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_05_0040 - 8463585-8464396,8464664-8465273,8465708-8466169 30 1.6
07_01_0239 + 1744353-1746365 30 1.6
02_04_0645 + 24703102-24704598 30 1.6
10_02_0169 - 6142199-6142581,6143015-6143095,6143313-6143691,614... 29 3.8
04_04_0470 + 25474029-25475525 29 3.8
05_03_0618 - 16262826-16263097,16263111-16263183 28 5.0
02_04_0646 + 24710348-24711838 28 5.0
06_03_0905 + 25843547-25844314 28 6.7
04_01_0446 - 5815231-5816202 28 6.7
03_05_0585 + 25869955-25869984,25870092-25870182,25870402-258705... 28 6.7
11_01_0315 - 2347254-2347345,2347485-2347895,2348182-2349633,234... 27 8.8
10_08_0936 - 21679002-21679800,21679893-21680116,21681174-216813... 27 8.8
10_06_0130 - 11055305-11055593,11055666-11055949,11057271-110573... 27 8.8
01_06_1782 - 39842133-39842160,39842531-39842657,39842980-39844675 27 8.8
>10_05_0040 - 8463585-8464396,8464664-8465273,8465708-8466169
Length = 627
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = +1
Query: 103 DWGGLS-PVHIEYLPRPISLVIIQHTVTPTCETNEACMVTMRS--LQDNHMDNLK 258
+WG + P I +LP I LVI + T P N ++T+RS L +N + N++
Sbjct: 410 EWGSVCIPPDIVHLPHLIHLVIPEGTGLPDGIGNLKSLITLRSFDLGENSLHNIR 464
>07_01_0239 + 1744353-1746365
Length = 670
Score = 29.9 bits (64), Expect = 1.6
Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 3/102 (2%)
Frame = +3
Query: 285 VGGNGKVYEG---SGWLHVGAHTIGYNRKSIGISFVGNYNNKEATNQQLEAVRSLLQCGV 455
VGG GKVY+G S L VG + ++ K FV + + V+ L C
Sbjct: 356 VGGFGKVYKGVLPSSKLEVGVKVMSHDSKQGMKEFVAEVVSMGRLRHR-NLVQLLGYCR- 413
Query: 456 KQGHLTSNYKVVGHRQVLATESPGRYLYNQIRRWPEWTENVE 581
++G L Y + + S +YLY+Q + P W + E
Sbjct: 414 RKGELLLVY------EYMPNGSLDKYLYDQDKPSPNWIQRFE 449
>02_04_0645 + 24703102-24704598
Length = 498
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 316 LDGFTSERTRSVTTGNLSGSASSVTTTI-KRQRTSNWKL*DHC 441
+DG S R+ T +L+GS +++TT KR T +W + D C
Sbjct: 271 IDGQWSAVGRTAVTTSLAGSVAALTTLYGKRWLTGHWNVTDVC 313
>10_02_0169 -
6142199-6142581,6143015-6143095,6143313-6143691,
6144019-6144372
Length = 398
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -1
Query: 370 PIDFL--L*PIVCAPT*SHPEPS*TFPLPPTTKFIPMSNISNY 248
P+DF + P V AP +HP P PPT K + +S +
Sbjct: 14 PLDFFRSVKPRVVAPQKTHPTKKPIIPAPPTFKIMADKTLSEF 56
>04_04_0470 + 25474029-25475525
Length = 498
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 316 LDGFTSERTRSVTTGNLSGSASSVTTTI-KRQRTSNWKL*DHC 441
++G S R+ T L+GS +++TT KR +T +W + D C
Sbjct: 269 INGQWSGVGRTAVTTTLAGSVAALTTLFGKRLQTGHWNVVDVC 311
>05_03_0618 - 16262826-16263097,16263111-16263183
Length = 114
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 287 RWQRESLRRFWMASRRSAHDR 349
RW R + RR W+ RRS H R
Sbjct: 8 RWSRMARRRRWLKRRRSGHCR 28
>02_04_0646 + 24710348-24711838
Length = 496
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +1
Query: 343 RSVTTGNLSGSASSVTTTI-KRQRTSNWKL*DHC 441
R+ T L+GS +++TT KR +T +W + D C
Sbjct: 278 RTAVTTTLAGSTAALTTLFGKRLQTGHWNVIDVC 311
>06_03_0905 + 25843547-25844314
Length = 255
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 349 PIVCAPT*SHPEPS*TFPLPPTT 281
P+V P ++P P T+P PP T
Sbjct: 130 PVVVGPPVTYPTPPVTYPTPPVT 152
>04_01_0446 - 5815231-5816202
Length = 323
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/15 (73%), Positives = 14/15 (93%), Gaps = 1/15 (6%)
Frame = +2
Query: 281 RRRWQR-ESLRRFWM 322
RRRW+R ES+RR+WM
Sbjct: 290 RRRWKRAESMRRWWM 304
>03_05_0585 +
25869955-25869984,25870092-25870182,25870402-25870551,
25870687-25870774,25871096-25871590,25871755-25871890,
25872117-25872310,25872421-25872529,25872685-25872796,
25873260-25873339,25873503-25873607
Length = 529
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/71 (23%), Positives = 35/71 (49%)
Frame = +1
Query: 43 FTIFLSWKSVRADCGVVSKKDWGGLSPVHIEYLPRPISLVIIQHTVTPTCETNEACMVTM 222
+ I LS++SV+A +V +W L + + + + + HT TPT T+ + +
Sbjct: 405 YRIALSYRSVKA---LVEMHNWKQL--LEKDQAGKKGGFIFLPHTNTPTILTDTQATICV 459
Query: 223 RSLQDNHMDNL 255
R + H+ ++
Sbjct: 460 RMRSEEHLHDI 470
>11_01_0315 -
2347254-2347345,2347485-2347895,2348182-2349633,
2349688-2350045,2350818-2351177,2351321-2351419,
2351856-2351948,2352078-2352215,2352389-2352476,
2352682-2352770,2353113-2353178,2353370-2353481,
2354702-2354901
Length = 1185
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -3
Query: 170 WIITRLIGRGKYSICTGDSPP--QSFLETTPQSARTLFQLKNI 48
W + R + + + +C GD P +S TP + +L+++
Sbjct: 668 WYVVRFVSKHNHPLCKGDQVPFLRSHRRITPAEQAKMVELRDV 710
>10_08_0936 -
21679002-21679800,21679893-21680116,21681174-21681361,
21681505-21682597
Length = 767
Score = 27.5 bits (58), Expect = 8.8
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +1
Query: 73 RADCGVVSKKDWGGLSPVHIEYLPRPISL 159
R++CG ++ ++GG +P P P+ L
Sbjct: 265 RSECGFAARSEYGGTAPSEYAAAPLPLPL 293
>10_06_0130 -
11055305-11055593,11055666-11055949,11057271-11057398,
11058522-11058606,11058917-11060872
Length = 913
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = -3
Query: 284 DEIHPDVQYFKLSI*LSCKLRIVTMHASFVSQVGVTVCWIITRLI 150
+ +HPD+ + + I CK+R++ A +++ VC + R I
Sbjct: 620 ENVHPDIITYNILISWHCKVRLLDDAAMLLNRAMAAVCPVGDRRI 664
>01_06_1782 - 39842133-39842160,39842531-39842657,39842980-39844675
Length = 616
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +3
Query: 411 NQQLEAVRSLLQCGVKQGHLTSNYKVVGHRQVLATESPGRYLYNQIRR 554
N+ LE + +L+CG+K + + V Q+ A E GR+L++ + +
Sbjct: 292 NEALEFFQRMLRCGIKPDRVAAVGAVAACAQLGALEQ-GRWLHSYLEK 338
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,073,018
Number of Sequences: 37544
Number of extensions: 405511
Number of successful extensions: 1080
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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