Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_M16
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ...    27   2.2  
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom...    27   2.9  
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos...    26   3.8  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    25   6.6  
SPAC1093.02 |||pyridoxamine 5'-phosphate oxidase |Schizosaccharo...    25   6.6  
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    25   8.8  

>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
           Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 879

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 497 LHVKDRLVHLRPRSHRCLIVMTTLWGE 577
           L V  R VHL P  HRC+ V+  L G+
Sbjct: 64  LLVLARWVHLSPSVHRCIDVVAFLQGQ 90


>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -1

Query: 462 LRNIWQVFSGECFGT--EIVVVVMEEIYFTGSRHFV 361
           +  IW V SG+C  T  E + V +  + FT +R ++
Sbjct: 203 MARIWDVLSGQCLKTLVEPINVPLSNLQFTENRKYL 238


>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 980

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 511 QIGASATPLTPMFNRNDYSLGGKLNL 588
           + G  A  +TP  + NDY +G + NL
Sbjct: 378 EFGTGAVKITPAHDPNDYEVGKRHNL 403


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
            subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
 Frame = +1

Query: 133  SRVRRQAGALTVNSDGTSGAMVKVPITGNENHRLSALGSVDLTNQMKLGAATAGLAYD-- 306
            S + +++G + +  +GT G    +   G    + S    +++ + + + AA   +  +  
Sbjct: 1228 SVINQESGKIELFMEGT-GLQAVMNTEGIVGTKTSTNHVMEMKDVLGIEAARYSIISEIG 1286

Query: 307  -NVNGHGATLTKTHIPGFGDKMTAAGKV 387
              +  HG T+   HI   GD MT  G+V
Sbjct: 1287 YTMAKHGLTVDPRHIMLLGDVMTCKGEV 1314


>SPAC1093.02 |||pyridoxamine 5'-phosphate oxidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +2

Query: 473 STCRCRSGLHVKDRLVHLRPRSHRCLIVMTTL 568
           ST R  SG  V  RLV L+   HR  I+ T L
Sbjct: 62  STARLPSG-RVSSRLVLLKELDHRGFIIFTNL 92


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 304 DNVNGHGATLTKTHIPGFGDKMTAAGKVNL 393
           +N     AT T T   GFGDK + AGK N+
Sbjct: 251 ENKESTTATSTLTDA-GFGDKSSTAGKHNV 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.132    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,710,445
Number of Sequences: 5004
Number of extensions: 56558
Number of successful extensions: 149
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)