Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_M12
         (535 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces...    28   1.0  
SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces pom...    27   2.3  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   9.4  
SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces pombe...    25   9.4  
SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr 2...    25   9.4  

>SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 265

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +1

Query: 64  RNKICNKYYSYNNNLNINTGMARL--FFTIYNKKKYHIFMS 180
           +N++ +K+  Y NNLN  T   RL     ++N +K  +F++
Sbjct: 123 KNQLVHKWEQYTNNLNYRTLKFRLGKMCLLFNDEKTRMFLA 163


>SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +3

Query: 360 ISFF--IRVTAVCDVFSLLQYIDRWTSANYRIS 452
           ISFF  + +T+  D F+++  I RWT A   IS
Sbjct: 35  ISFFHDVPLTSDKDTFNMVTEIPRWTQAKCEIS 67


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 64  RNKICNKYYSYNNNLNINTGMARLFFTI 147
           RNK+C KY  Y+N + I+  +A+ F T+
Sbjct: 507 RNKLCEKYLFYSNFIWISFIVAQ-FVTL 533


>SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +3

Query: 363 SFFIRVTAVCDVFSLLQYIDRWTSANYRISHSLADTFKFFEKV 491
           S  + +   CD    LQY+++  ++   +  + A T + FEK+
Sbjct: 340 SALVELIGACDKVDDLQYMEQLHNSTDLLKKAFAYTSEVFEKI 382


>SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 277

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 149 ITKKNITYSCPLFTFIDLIK 208
           I  K + Y+ P F F DLIK
Sbjct: 126 ILSKRVNYTNPFFGFYDLIK 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,795,131
Number of Sequences: 5004
Number of extensions: 30851
Number of successful extensions: 78
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)