Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_M08
(594 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0117 - 12486672-12486818,12487438-12487488,12487583-124877... 163 9e-41
10_02_0022 - 4290708-4290788,4291254-4291305,4291396-4291484,429... 145 3e-35
06_01_0262 - 1930552-1930632,1931096-1931152,1931236-1931287,193... 125 3e-29
03_02_0477 - 8770905-8770985,8771164-8771361,8771939-8772025,877... 116 2e-26
03_02_0365 - 7816966-7817046,7817441-7817492,7817590-7817678,781... 94 1e-21
11_01_0737 + 6211149-6211466,6212022-6212183,6212290-6213101,621... 29 2.8
05_06_0148 + 25989595-25990956 29 3.7
09_06_0280 + 22010270-22011407,22011890-22013097 27 8.5
>09_03_0117 -
12486672-12486818,12487438-12487488,12487583-12487729,
12488037-12488354,12488450-12488604,12488941-12489248,
12490644-12491038
Length = 506
Score = 163 bits (396), Expect = 9e-41
Identities = 81/179 (45%), Positives = 117/179 (65%), Gaps = 1/179 (0%)
Frame = +1
Query: 61 IKIILARQIFDATGVPTTEVDMVTELG-LFRIGVPSTDRKKLAEAVQLRDNNPKEYHGMG 237
++ I ARQI D+ G PT EVD+V G L R VPS + EA++LRD + Y G G
Sbjct: 51 VRSIRARQIVDSRGNPTVEVDLVAGDGRLHRSAVPSGASTGIYEALELRDGDGAAYGGKG 110
Query: 238 VSSAVKNINTIIAPELIKQNLEVTMQKEIDQFMISLDGTENRSRLGANAIMCVSLVVXXX 417
V +AV+NIN +IAP+L+ ++V Q ++D M+ +DGT N+S+LGANAI+ VSL V
Sbjct: 111 VLNAVRNINEVIAPKLV--GVDVRNQSDVDAIMLDIDGTPNKSKLGANAILGVSLSVCRA 168
Query: 418 XXXXXXIPLYRHISDMAGVTTIILPVPHFTILTGGILASNGLPFQEYTIMPIGASSFAE 594
+PLY+HI ++AG +++PVP F ++ GG A N L QE+ ++P+GASSF+E
Sbjct: 169 GAGAKEVPLYKHIQELAGTKELVMPVPAFNVINGGSHAGNNLAMQEFMLLPVGASSFSE 227
>10_02_0022 -
4290708-4290788,4291254-4291305,4291396-4291484,
4291565-4291615,4291699-4291893,4292010-4292090,
4292190-4292252,4292480-4292554,4292630-4292710,
4292784-4292888,4292977-4293057,4293156-4293242,
4293322-4293369,4293923-4293987,4294109-4294172,
4294828-4294896
Length = 428
Score = 145 bits (351), Expect = 3e-35
Identities = 84/183 (45%), Positives = 114/183 (62%), Gaps = 8/183 (4%)
Frame = +1
Query: 70 ILARQIFDATGVPTTEVDMVTELGLF-RIGVPSTDRKKLAEAVQLRDNNPKEYHGMGVSS 246
+ ARQIFD+ G PT EVD+ G F R VPS + EA++LRD +Y G GVS
Sbjct: 8 VKARQIFDSRGNPTVEVDVCCSDGTFARAAVPSGASTGVYEALELRDGG-SDYLGKGVSK 66
Query: 247 AVKNINTIIAPELIKQNLEVTMQKEIDQFMIS-LDGTEN-----RSRLGANAIMCVSLVV 408
AV N+N++IAP LI + + T Q E+D FM+ LDGT+N + +LGANAI+ VSL +
Sbjct: 67 AVDNVNSVIAPALIGK--DPTSQAELDNFMVQQLDGTKNEWGWCKQKLGANAILAVSLAI 124
Query: 409 XXXXXXXXXIPLYRHISDMAGVTTIILPVPHFTILTGGILASNGLPFQ-EYTIMPIGASS 585
IPLY+HI+++AG ++LPVP F ++ GG A N L Q E+ I+P GA+S
Sbjct: 125 CKAGAIIKKIPLYQHIANLAGNKQLVLPVPAFNVINGGSHAGNKLAMQAEFMILPTGAAS 184
Query: 586 FAE 594
F E
Sbjct: 185 FKE 187
>06_01_0262 -
1930552-1930632,1931096-1931152,1931236-1931287,
1931373-1931461,1931551-1931601,1931696-1931890,
1932015-1932095,1932205-1932267,1933045-1933119,
1933194-1933352,1933353-1933463,1933536-1933616,
1933721-1933807,1933920-1933967,1934357-1934421,
1935002-1935065,1935220-1935288
Length = 475
Score = 125 bits (301), Expect = 3e-29
Identities = 79/174 (45%), Positives = 103/174 (59%), Gaps = 10/174 (5%)
Frame = +1
Query: 61 IKIILARQIFDATGVPTTEVDMVTELGLFRIG-VPSTDRKKLAEAVQLRDNNPKEYHGMG 237
I+ + ARQIFD+ G PT EVD+ G F G VPS + EA++LRD +Y G G
Sbjct: 5 IQSVKARQIFDSRGNPTVEVDVGLSDGSFARGAVPSGASTGIYEALELRDGG-SDYLGKG 63
Query: 238 VSSAVKNINTIIAPELIKQNLEVTMQKEIDQFMIS-LDGTEN-----RSRLGANAIMCVS 399
V AV N+NTII P LI + + T Q +ID FM+ LDGT N + +LGANAI+ VS
Sbjct: 64 VLKAVSNVNTIIGPALIGK--DPTEQVDIDNFMVQQLDGTSNNWGWCKQKLGANAILAVS 121
Query: 400 LVVXXXXXXXXXIPLYR---HISDMAGVTTIILPVPHFTILTGGILASNGLPFQ 552
L V IPLY+ HI+++AG T++LPVP F ++ GG A N L Q
Sbjct: 122 LAVCKAGAMVKKIPLYQKLQHIANLAGNKTLVLPVPAFNVINGGSHAGNKLAMQ 175
>03_02_0477 -
8770905-8770985,8771164-8771361,8771939-8772025,
8772094-8772179,8772270-8772368,8772431-8772551,
8773251-8773331,8773643-8773723,8773972-8774088,
8774185-8774256,8774621-8775055
Length = 485
Score = 116 bits (278), Expect = 2e-26
Identities = 57/178 (32%), Positives = 95/178 (53%)
Frame = +1
Query: 61 IKIILARQIFDATGVPTTEVDMVTELGLFRIGVPSTDRKKLAEAVQLRDNNPKEYHGMGV 240
I + ARQI D G P EV + T + R + D + A A +RD ++ V
Sbjct: 47 ITSVRARQILDGRGEPAVEVSLHTNKAVHRASAAAADAPEGAAADAVRDAEKRKLLARAV 106
Query: 241 SSAVKNINTIIAPELIKQNLEVTMQKEIDQFMISLDGTENRSRLGANAIMCVSLVVXXXX 420
+ AV+ IN ++ L+ ++ Q +IDQ ++ LD +++ +G N+++ VS+
Sbjct: 107 ADAVRVINDKVSEALV--GMDPQQQSQIDQAIMDLDKAHHKAEIGVNSMLAVSIAACKAG 164
Query: 421 XXXXXIPLYRHISDMAGVTTIILPVPHFTILTGGILASNGLPFQEYTIMPIGASSFAE 594
+PLY+HI+++ G + LP+P T++ GG A N LP QE I+P+GA +F E
Sbjct: 165 AAEKEVPLYKHIAELVGKSATTLPIPAITVINGGTHAGNSLPIQEIMILPVGAKNFEE 222
>03_02_0365 -
7816966-7817046,7817441-7817492,7817590-7817678,
7817762-7817854,7817900-7818094,7818172-7818249,
7818353-7818415,7818806-7818880,7818958-7819038,
7819329-7819409,7819516-7819602,7819682-7819729,
7820317-7820381,7820566-7820629,7821254-7821322
Length = 406
Score = 94.3 bits (224), Expect(2) = 1e-21
Identities = 61/137 (44%), Positives = 80/137 (58%), Gaps = 7/137 (5%)
Frame = +1
Query: 61 IKIILARQIFDATGVPTTEVDMVTELGLF-RIGVPSTDRKKLAEAVQLRDNNPKEYHGMG 237
I+ + ARQIFD+ G PT EVD+ G F R VPS + EA++LRD +Y G G
Sbjct: 5 IQSVKARQIFDSRGNPTVEVDICCSDGTFARAAVPSGASTGVYEALELRDGG-SDYLGKG 63
Query: 238 VSSAVKNINTIIAPELIKQNLEVTMQKEIDQFMI-SLDGTEN-----RSRLGANAIMCVS 399
V AV N+N+II P LI + + T Q ID FM+ LDGT+N + +LGANAI+ VS
Sbjct: 64 VLKAVDNVNSIIGPALIGK--DPTEQTVIDNFMVQQLDGTKNEWGWCKQKLGANAILAVS 121
Query: 400 LVVXXXXXXXXXIPLYR 450
L + IPLY+
Sbjct: 122 LALCKAGAIIKKIPLYQ 138
Score = 26.2 bits (55), Expect(2) = 1e-21
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 547 FQEYTIMPIGASSFAE 594
+QE+ I+P GASSF E
Sbjct: 137 YQEFMILPTGASSFKE 152
>11_01_0737 +
6211149-6211466,6212022-6212183,6212290-6213101,
6213188-6213395,6214157-6214364,6214752-6215206,
6215585-6216011,6216391-6216471,6216571-6216761,
6216855-6216998
Length = 1001
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 172 RKKLAEAVQLRDNNPKEYHGMGVS 243
+++L EA++L NPK + MGVS
Sbjct: 741 KEQLIEAIELPQKNPKAFENMGVS 764
>05_06_0148 + 25989595-25990956
Length = 453
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +1
Query: 436 IPLYRHISDMAGVTTIILPVPHFTILTGGILASNGLPFQEYT-IMPIGAS 582
+P Y + + AGV L +PH+ T G L G + + PI AS
Sbjct: 110 VPAYFYFTSSAGVLAAFLHLPHYFATTEGDLKDMGKALLHFPGVPPIPAS 159
>09_06_0280 + 22010270-22011407,22011890-22013097
Length = 781
Score = 27.5 bits (58), Expect = 8.5
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = +1
Query: 181 LAEAVQLRDN--NPKEYHGMGVSSAVKNINTIIAPELIKQNLEVTMQKEIDQFM 336
LAE + +N N +E G G + K I + + IK++ VT+Q+EID+F+
Sbjct: 446 LAELEKATNNFDNSRELGGGGHGTVYKGILSDLHVVAIKKS-NVTVQREIDEFI 498
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,078,146
Number of Sequences: 37544
Number of extensions: 257577
Number of successful extensions: 509
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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