Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_M07
         (613 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr...    27   2.1  
SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   2.8  
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    25   6.5  
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    25   8.6  

>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -2

Query: 372 ITSNFRLNYYDNSYVLYQLYHI 307
           IT+++RL+  D SYV+  L+H+
Sbjct: 193 ITTSYRLDPRDTSYVVMPLFHV 214


>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 127

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 149 MI*KEYISVVIYMSSKSSITNVTIFMLLFFYC 54
           M+ K Y S   +MSSKS +  V  +++ F YC
Sbjct: 29  MLYKTYTSY-FFMSSKSFVRGVKRYLIYFCYC 59


>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
 Frame = +3

Query: 78  NRHIGDGAFG*HVNHNTDIFFSNHL----PSLFNYKMFEEIRKISSFHQSSHN 224
           N  IG G FG  V+++ +    N+L    P  F Y + E+  K+S+ +  S N
Sbjct: 514 NIQIGSGLFGIKVSNDQNYLLVNYLGPEIPKQFIYSIHED--KVSTSNDHSKN 564


>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 138 FSNHLPSL-FNYKMFEEIRKISSFHQSSHNKTFHMSQD 248
           +SN + S  F  + FEEI K  +F + S N+ +  S+D
Sbjct: 331 YSNKVSSSDFYTRSFEEIEKTFTFVEISDNEFYTASED 368


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,248,421
Number of Sequences: 5004
Number of extensions: 42751
Number of successful extensions: 67
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)