Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_M06
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz...    31   0.13 
SPBC1685.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.9  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      27   2.9  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   5.0  
SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac...    25   8.8  

>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
           Mad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
 Frame = +2

Query: 122 RLAADN-QRWDTACERAAHWQRRLQRALVHNQQFHDIVVELVSVLSAAERGVRAREPLRL 298
           +L AD+ ++ +T C+  A  +++LQ   VHNQQ  + + ++ S +   +  + A + L++
Sbjct: 186 KLFADSREQLETKCKELAAAEQQLQELSVHNQQLEESIKQVSSSIELEK--INAEQRLQI 243

Query: 299 S 301
           S
Sbjct: 244 S 244


>SPBC1685.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 325

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
 Frame = +2

Query: 110 RVRARLAADNQRWDTACERAAHWQRRLQRALVHNQQFH-DIVVELVSVLSAAERGVRARE 286
           R+R  +A   Q W  AC+  A   R  QR L        DI+ ++ S  ++     +A E
Sbjct: 78  RIRKAIAEQLQLWCQACQENADLYRSQQRKLKSRWDSQTDILSQIESTKASLAEVHKAEE 137

Query: 287 PLRLSRDTADLQRDFRRFSE 346
              L      L  + +   E
Sbjct: 138 ISNLKTSITHLDEEIQILQE 157


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 476  RLQSLRKLCGVYALKLGAALARQPFACC 559
            RL+ LRKLC  + + L   +   P+A C
Sbjct: 978  RLRELRKLCQSFLVALSKNIENIPYALC 1005


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 75  SPRMLGPRRTRSACGHGSPPTTSAGTQLAS 164
           SPR+ GP    +    G PPTTS+    AS
Sbjct: 259 SPRVFGPTLGYNTPPFGYPPTTSSALPNAS 288


>SPBC8D2.19 |mde3||serine/threonine protein kinase
           Mde3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 559

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 277 PHAALRSGQHRHQLDHDIVELLVVHERALEPTLPVRS 167
           P   LRSG + H +D      +V    +L+P  P R+
Sbjct: 201 PELLLRSGSYNHSVDLYAFGCIVFEIYSLKPLFPGRN 237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,279,558
Number of Sequences: 5004
Number of extensions: 17474
Number of successful extensions: 54
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)