Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_M06
         (617 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0011 + 6083431-6085541,6086659-6086779,6087188-6087247,608...    32   0.42 
12_01_0288 - 2160981-2161076,2161150-2161236,2161333-2161419,216...    30   1.3  
05_01_0033 + 220125-220190,220274-224445,224863-224949,225048-22...    30   1.7  
01_06_1608 - 38612754-38616947,38617030-38617095                       30   1.7  
01_01_0539 + 3952039-3952219,3952295-3952984,3953115-3953191,395...    29   3.0  
04_04_0198 + 23502657-23502900,23505228-23505298,23505690-235057...    28   6.8  

>02_02_0011 + 6083431-6085541,6086659-6086779,6087188-6087247,
            6087354-6088391,6089733-6089925,6090326-6090375,
            6090470-6090744,6091114-6091180,6091189-6091278,
            6091301-6091381,6091435-6091593
          Length = 1414

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 21/65 (32%), Positives = 30/65 (46%)
 Frame = -2

Query: 361  QLVAQLAEAPEVALQVGGVARQPQRLPRPHAALRSGQHRHQLDHDIVELLVVHERALEPT 182
            QLV Q  + P   L V    +QP   P P  +L+   H +Q      + L  H+ AL+P 
Sbjct: 975  QLVTQ--QQPTRQLPVPPTPQQPLPPPPPPPSLQQLHHPYQHQQQQQQQLYHHQNALQPQ 1032

Query: 181  LPVRS 167
            +P  S
Sbjct: 1033 IPSNS 1037


>12_01_0288 -
           2160981-2161076,2161150-2161236,2161333-2161419,
           2161641-2161726,2161805-2161908,2162618-2162704,
           2162790-2162913,2163058-2163176,2163268-2163397,
           2163583-2163671,2163804-2163892,2164579-2164672,
           2164778-2164857,2164952-2165041,2166307-2166393,
           2166495-2166539,2166966-2167042,2167120-2167225,
           2167383-2167464,2167553-2167624,2168106-2168183,
           2168259-2168349,2168826-2168979
          Length = 717

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +3

Query: 75  SPRMLGPRRTRSACGHGSPPTTSAGTQLASELRTG 179
           +P     RR R+  GH  PPT S G  LA+    G
Sbjct: 13  APMGAAQRRLRAVSGHLQPPTESGGVDLAANPTAG 47


>05_01_0033 +
           220125-220190,220274-224445,224863-224949,225048-225084,
           225296-225356,225666-226918
          Length = 1891

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = +2

Query: 218 FH-DIVVELVSVLSAAERGVRAREPLRLSRDTADLQRDFRRFSEL-RDELQR 367
           FH D+V E V ++   ERG  A E + +    A  ++D + ++ L RD+++R
Sbjct: 252 FHSDVVPEPVRIVPVIERGREALEEINVKMGLAFDEQDIKYYTHLFRDDIKR 303


>01_06_1608 - 38612754-38616947,38617030-38617095
          Length = 1419

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = +2

Query: 218 FH-DIVVELVSVLSAAERGVRAREPLRLSRDTADLQRDFRRFSEL-RDELQR 367
           FH D+V E V ++   ERG  A E + +    A  ++D + ++ L RD+++R
Sbjct: 256 FHSDVVPEPVRIVPVIERGREALEEINVKMGLAFDEQDIKYYTHLFRDDIKR 307


>01_01_0539 +
           3952039-3952219,3952295-3952984,3953115-3953191,
           3953356-3953931
          Length = 507

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 7/61 (11%)
 Frame = -2

Query: 334 PEVALQVGGVA---RQPQRLPRPHAALRSGQ----HRHQLDHDIVELLVVHERALEPTLP 176
           PE A Q  G A     P   P   AA+ + +    H H L H      +VH RA+ P  P
Sbjct: 349 PEYATQAAGPAIYGAHPATQPHYTAAVAAQEYYHHHHHHLQHHPAAAALVHHRAVAPPPP 408

Query: 175 V 173
           +
Sbjct: 409 L 409


>04_04_0198 +
           23502657-23502900,23505228-23505298,23505690-23505727,
           23505905-23507693
          Length = 713

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -2

Query: 370 GALQLVAQLAEAPEVALQVGGVARQPQRLPRPHAALRSGQHRH 242
           GA +L A  A A + A    GV  +P ++PR       G  RH
Sbjct: 217 GAARLAAVAAAAADDASVAAGVKPRPWKVPRTKEEAELGDDRH 259


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,088,234
Number of Sequences: 37544
Number of extensions: 166984
Number of successful extensions: 726
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)