Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_M02
         (545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo...    60   2e-10
SPCC965.07c |gst2||glutathione S-transferase Gst2|Schizosaccharo...    50   2e-07
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce...    37   0.002
SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|c...    29   0.59 
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    27   1.8  
SPCC1442.11c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    27   2.4  
SPBC1778.08c |arc3|arc21|ARP2/3 actin-organizing complex subunit...    26   3.2  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    26   4.2  
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    25   7.3  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.6  

>SPCC191.09c |gst1||glutathione S-transferase
           Gst1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 229

 Score = 60.1 bits (139), Expect = 2e-10
 Identities = 37/85 (43%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
 Frame = +1

Query: 106 LGLELDCKDVNFVKLEHKSPEFMKINPMGTIPTLID---DDFIISDSNAIMTYLLTKYGG 276
           L L  + + VNF K E KSPE + +NP G +PTLID   +D+ I +S+AI+ YL  KY  
Sbjct: 25  LDLTYETRYVNFSKNEQKSPEHLALNPNGRVPTLIDHHNNDYTIWESDAILIYLADKYDT 84

Query: 277 EHNEKLYPSDARTRAIVDQCLYFNA 351
           E    L P D      V Q L+F A
Sbjct: 85  ERKISL-PRDHPEYYKVIQYLFFQA 108



 Score = 32.7 bits (71), Expect = 0.036
 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
 Frame = +3

Query: 435 DIDTAYGVVEAYLENRKFVAADRLTIADLS--CWDN 536
           +I    GV+E  L++R ++ A+R TIADLS   W+N
Sbjct: 139 EIKRVLGVLEDILKDRDYLVANRFTIADLSFISWNN 174


>SPCC965.07c |gst2||glutathione S-transferase
           Gst2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 50.0 bits (114), Expect = 2e-07
 Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
 Frame = +1

Query: 34  MPNLVLYKMDASPPACAVRILCDLLGLELDCKDVNFVKLEHKSPEFMKINPMGTIPTLID 213
           M +  LY     P    V +    L L  +    +F K E K  E + +NP G +PTL+D
Sbjct: 1   MAHFTLYSHAGGPNPWKVVLALKELNLSYEQIFYDFQKGEQKCKEHLALNPNGRVPTLVD 60

Query: 214 ---DDFIISDSNAIMTYLLTKYGGEHNEKLYPSDARTRAIVDQCLYFNA 351
              +D+ I +S+AI+ YL  KY  +    L   D     ++ Q L+F A
Sbjct: 61  HKNNDYTIWESDAILIYLADKYDTDRKISLSFDDPEYYKLI-QYLFFQA 108



 Score = 29.9 bits (64), Expect = 0.26
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +3

Query: 414 ATAQQFQDIDTAYGVVEAYLENRKFVAADRLTIADLS 524
           A  +   +I    GV+E  L++R ++ A++ TIADLS
Sbjct: 132 AVTRYRNEIKRVLGVLEDILKDRDYLVANKYTIADLS 168


>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 36.7 bits (81), Expect = 0.002
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = +1

Query: 163 PEFMKINPMGTIPTLIDDDFIISDSNAIMTYLLTKYG 273
           P + K++P+G  P ++DD     +S AI+ +L+ KYG
Sbjct: 40  PAYTKLSPLGKSPIVVDDGVTYIESAAILEHLVRKYG 76


>SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 408

 Score = 28.7 bits (61), Expect = 0.59
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 359 KTPALKYKHWSTIARVLASLGYNFS 285
           +TP +KY+H+S  A+VL  + Y  S
Sbjct: 281 QTPGMKYRHYSPTAKVLLFVNYTES 305


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -1

Query: 218 SSSINVGIVPIGLIFMNSGDLCSSLTKLT 132
           +++I+    P  L F NS +LCSSLT+ T
Sbjct: 716 NNAIDPVSAPGNLDFDNSAELCSSLTRFT 744


>SPCC1442.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 182

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +1

Query: 238 NAIMTY--LLTKYGGEHNEKLYPSDARTRAIVDQCLYFNAGVFF 363
           NAI++Y  +++ +   H +KL+     T  I  +  YF   +FF
Sbjct: 91  NAILSYQTIISSFPHNHVQKLFQRTQSTNMIYTKLEYFGHSLFF 134


>SPBC1778.08c |arc3|arc21|ARP2/3 actin-organizing complex subunit
           Arc21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 174

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +1

Query: 238 NAIMTYLLTKYGGEHNEKLYPSDARTRAIVDQCL-YFNAGVFF 363
           N  M  L TK+ G      YP+D     I+D+C+  F A  FF
Sbjct: 19  NIAMLPLKTKFRGP----AYPADESQMDIIDECIGLFRANCFF 57


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 73  PACAVRILCDLLGLELDCKD 132
           P C +R  C  LG+++ CKD
Sbjct: 847 PICILRGTCLRLGIQISCKD 866


>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 223 IISDSNAIMTYLLTKYGGEHNEKLYPSDART 315
           ++ D++    YLL  Y G   E   P DART
Sbjct: 319 MVIDTSQQKLYLLGNYFGSSRETEVPPDART 349


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -1

Query: 170 NSGDLCSSLTKLTSLQSNSSPKRSQRILTAQAGGLASILYNT 45
           +SG   SSL+  +S+ S+SS   S  + T+     ASI+ +T
Sbjct: 136 SSGMSSSSLSHSSSVPSSSSSYHSSSMTTSGLSSSASIVSST 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,208,531
Number of Sequences: 5004
Number of extensions: 43851
Number of successful extensions: 118
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)