Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_L24
         (534 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ...    28   1.0  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   1.3  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    26   4.1  
SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr 3...    26   4.1  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   5.4  
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    25   5.4  
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    25   5.4  
SPBC1347.06c |cki1||serine/threonine protein kinase Cki1|Schizos...    25   7.1  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    25   7.1  
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy...    25   7.1  
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi...    25   9.4  
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom...    25   9.4  
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.4  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    25   9.4  
SPAC6G10.03c |||abhydrolase family protein, unknown biological r...    25   9.4  

>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +3

Query: 111 EKHREWSHRATANDISSPRRKHLADPPDHNKLVAMARYVLHNSDWA 248
           E+  + +H+ T  + S P   ++ +PPD +  +  A    HN D A
Sbjct: 224 ERGSQQAHQTTPQNHSLPHPPNMFEPPDEDHQLPSAANNSHNHDHA 269


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 19/65 (29%), Positives = 26/65 (40%)
 Frame = -3

Query: 340 VELARDPSTTDFTLENGNPSIAGNTDIVANEAQSELCRTYLAIATNLLWSGGSAKCFRRG 161
           V+   +    D     GNP I  N D   +  +  L +  L    +L+ SGGS    R  
Sbjct: 463 VQYELEAGLQDIKSGKGNPEIVLNMDYAISYDRYFLLKNLLKFVLHLIQSGGSVVELRNL 522

Query: 160 EDISL 146
            D SL
Sbjct: 523 IDSSL 527


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 340 VELARDPSTTDFTLENGNPSIAGNTD 263
           + + R  STT F+  N  P++ GN D
Sbjct: 87  IPITRSYSTTFFSKTNDQPTVTGNQD 112


>SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 260

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -2

Query: 209 NQFIVVRRIGQMLPTWGRYIVSCGS 135
           N+ IV++ + ++L T GR++  CG+
Sbjct: 115 NRPIVMKGVSRVLRTKGRFVAECGA 139


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 3/91 (3%)
 Frame = +3

Query: 210  AMARYVLHNSDWASLATISVLPAIEGFPFSNVKSVVDGSLANSTG--VPYFYMSPLDFSA 383
            A   Y L    WASL T ++   I G  FSN    +       T   V +    P+    
Sbjct: 812  ATPEYTLRTRIWASLRTQTLYRTING--FSNYSRAIKLLYRTETPELVEWTNGDPVRLDE 869

Query: 384  R-DLAXNTRATVLVSLEETRYCEKMKYDAED 473
              DL  N +    VS++  RY +  K +AE+
Sbjct: 870  ELDLMANRKFRFCVSMQ--RYAKFTKEEAEN 898


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 156 SSPRRKHLADPPDHNKLVAMARYVLHNSDWASL 254
           SS   +H+ DP   N +++ +R  + +S W S+
Sbjct: 609 SSFAERHIIDPEKRNFVISGSRLSVDSSPWISI 641


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +3

Query: 345 VPYFYMSPLDFSARDLAXNTRATVL--VSLEETRYCEKMKYDAEDPRCTRLML 497
           +PY   + +D S         + +L  VSLE+T   E+++   E+  C RL L
Sbjct: 634 IPYVRPNIVDSSIAQEKHGQSSNILDIVSLEDTPNFEEIRRTLENNHCARLYL 686


>SPBC1347.06c |cki1||serine/threonine protein kinase
           Cki1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 96  KGDRYEKHREWSHRATANDISSPRRKHLADPPDHNK 203
           K   YEK     H  +A+D + P +  L +PP   K
Sbjct: 346 KRSDYEKPFAEPHLNSASDSAEPNQNSLPNPPTETK 381


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 15/52 (28%), Positives = 20/52 (38%)
 Frame = -3

Query: 424 DTSTVALVFXAKSRALKSSGDM*KYGTPVELARDPSTTDFTLENGNPSIAGN 269
           D S  A +   +  +LKS         P EL     T   T  + NP+I  N
Sbjct: 59  DPSVSAKLDSQRKLSLKSGNMWDSLNAPSELTSKNPTVSSTTSSANPAIVSN 110


>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 505

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 325 PLLTLPVFHTFTCHHWTLVHVI*XKIPGLRCSY 423
           P+ TLP    FT H   L+++I   + G+   Y
Sbjct: 251 PITTLPKAIRFTAHRVLLLYIISVLVVGINLPY 283


>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
           Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 340 VELARDPSTTDFTLENGNPSIAGNTDI 260
           +E++R P+  D    + +P+I GN DI
Sbjct: 314 LEISRTPNLYDIISNSISPAIYGNVDI 340


>SPBC32F12.02 |rec14||recombination protein
           Rec14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
 Frame = +3

Query: 66  ALNVYADGKWKGDRYEKHREWS----HRATANDISSPRR---KHLADPPDHNKLVA 212
           +LNV A   W      K ++WS      +   +I +P +    HLA   D N +V+
Sbjct: 21  SLNVVAGNLWSASGDSKIKKWSIGDAEHSLVEEIDTPHKLGVHHLATSLDENVVVS 76


>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 682

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 7/105 (6%)
 Frame = +3

Query: 108 YEKHREWSHRA-TANDISSPRRKHLADPPDHNKLVAMARYV-LHNSDW-----ASLATIS 266
           Y +H ++     T  D  S R +  A P D    V  +R + +HN        A+ AT +
Sbjct: 486 YPQHSQYDPNGMTMRDHYSERIEPEAKPSDETLTVRSSRDLSVHNVGTLPVLSAAAATQA 545

Query: 267 VLPAIEGFPFSNVKSVVDGSLANSTGVPYFYMSPLDFSARDLAXN 401
            +P   G    +  S     + +   +PY Y +PL   A D A N
Sbjct: 546 AMPHTMGPSAHDSASAPSPHMQSQQALPYQYYNPLPAMA-DPAQN 589


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/37 (29%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
 Frame = +3

Query: 45  ILFISLCALNVYADGKWKGDRYEKH---REWSHRATA 146
           +L +++CA+ +     W+ D+Y+K+    +W +RA+A
Sbjct: 237 VLVLAMCAVAIRF---WQTDKYDKNELFEQWFNRASA 270


>SPAC6G10.03c |||abhydrolase family protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 428

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 464 CRRSSLHQIDALRKDEED 517
           C R  LH +D +R++E+D
Sbjct: 40  CEREVLHTVDFIRENEKD 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,401,130
Number of Sequences: 5004
Number of extensions: 51949
Number of successful extensions: 162
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)