Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_L24
(534 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0933 - 7199375-7199402,7199497-7199614,7199705-7199783,720... 74 8e-14
08_02_1259 - 25676523-25676624,25676726-25676851,25677023-256771... 31 0.58
06_01_0715 - 5193648-5193897,5193987-5194255,5195011-5195350,519... 30 1.0
09_03_0179 - 13131404-13131514,13131834-13131920,13132316-131324... 29 2.4
01_06_1579 + 38402868-38402894,38403394-38403582,38403817-384039... 29 2.4
02_04_0537 - 23734010-23734715,23735326-23735333 27 7.2
11_04_0443 - 17808897-17809110,17809169-17813652 27 9.5
05_01_0260 - 1993075-1994312,1996249-1997191 27 9.5
01_06_0795 - 32051794-32053362,32053452-32053595,32054102-320549... 27 9.5
>06_01_0933 -
7199375-7199402,7199497-7199614,7199705-7199783,
7200641-7200842,7200940-7200975,7201912-7202096
Length = 215
Score = 73.7 bits (173), Expect = 8e-14
Identities = 42/110 (38%), Positives = 60/110 (54%)
Frame = +3
Query: 189 PDHNKLVAMARYVLHNSDWASLATISVLPAIEGFPFSNVKSVVDGSLANSTGVPYFYMSP 368
P + A AR++ + W L+TIS + G PF NV S DG S G+PYFY++
Sbjct: 40 PAPTEAAATARWLAAQNTWGVLSTIS--SDLSGAPFGNVVSYSDGVPGESHGIPYFYLTT 97
Query: 369 LDFSARDLAXNTRATVLVSLEETRYCEKMKYDAEDPRCTRLMLSGKMKKI 518
LD +ARD + R + +S C K+ D E+P C +L L+GK+K I
Sbjct: 98 LDPTARDALEDERTSFTLSEFPLGTCGKI--DPENPTCAKLTLTGKLKLI 145
>08_02_1259 -
25676523-25676624,25676726-25676851,25677023-25677134,
25677294-25677385,25677751-25677828,25677910-25677989,
25678079-25678181,25678274-25678336,25678988-25679194
Length = 320
Score = 31.1 bits (67), Expect = 0.58
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = +3
Query: 285 GFPFSNVKSVVDGSLANSTGVPYFYMSPLDFSARDLAXNTRATVLVSL 428
G+PF S+VD S +S G P F +SPL R+L + R T++V +
Sbjct: 109 GYPFG---SLVDFS-NDSMGHPIFSLSPLAIHTRNLLSDPRCTLVVQV 152
>06_01_0715 -
5193648-5193897,5193987-5194255,5195011-5195350,
5195691-5195845,5196547-5196557,5197632-5197689,
5197855-5198004,5198074-5198169,5198398-5198818,
5198835-5198950,5199041-5199149,5199483-5199532,
5200936-5201004,5201366-5201459,5201550-5201820,
5202273-5202607,5202718-5202786,5202834-5202904
Length = 977
Score = 30.3 bits (65), Expect = 1.0
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +1
Query: 106 GMRSIENGLIEPQLTIYLPHVGSIWPILRTTINWLQWR 219
G +E + + T L H G +W + + WL+WR
Sbjct: 3 GASELEGSKDDRRKTTSLKHGGKVWTVKFLDVEWLKWR 40
>09_03_0179 -
13131404-13131514,13131834-13131920,13132316-13132448,
13133079-13133319,13133423-13133540,13133546-13133731,
13133864-13134049,13134443-13134652,13135171-13135347,
13135823-13135964,13136385-13136927,13137565-13138022
Length = 863
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +1
Query: 40 LEFCLFPCALLTSMLTGNGKAIGMRSIENGLIE 138
LEFCL PC S+L KAI + L+E
Sbjct: 704 LEFCLKPCGSEASILEDLSKAINLVHTRRNLVE 736
>01_06_1579 +
38402868-38402894,38403394-38403582,38403817-38403918,
38404005-38405963,38406050-38406105,38406332-38406368
Length = 789
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -2
Query: 140 GSMRPFSMLLIPIAFPFPVSIDVKSAQGNKQNSKIHCRYIS 18
G M P + L+ + FP ++I SA +K S HC+ ++
Sbjct: 277 GIMLPDPVKLLSLCFPVSLNITDGSASADKSGSPEHCQLVA 317
>02_04_0537 - 23734010-23734715,23735326-23735333
Length = 237
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/40 (40%), Positives = 18/40 (45%)
Frame = +3
Query: 99 GDRYEKHREWSHRATANDISSPRRKHLADPPDHNKLVAMA 218
GD K + W RA I S RR +A PP VA A
Sbjct: 5 GDAAAKKQPWYRRALGGLIPSARRAAIAAPPPPAAAVAGA 44
>11_04_0443 - 17808897-17809110,17809169-17813652
Length = 1565
Score = 27.1 bits (57), Expect = 9.5
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Frame = +3
Query: 216 ARYVLHNSDWASLATISVLPAIE----GFPFSNVKSVVDGSLANSTGVPYFYMSPLD-FS 380
A ++++SDWA + IS+LP ++ G + K ++ L G Y + +D F
Sbjct: 814 ANCIIYDSDWAVASRISILPFLDVQFYGDSILDYKPELE-LLGVLVGFKDNYTTVIDNFE 872
Query: 381 ARDLAXNTRATVLVSLEETRY 443
A ++ ATVL+ L+ RY
Sbjct: 873 FSSNAISSEATVLI-LKCVRY 892
>05_01_0260 - 1993075-1994312,1996249-1997191
Length = 726
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 279 IEGFPFSNVKSVVDGSLANSTGV 347
IE FPF N + DG ++STG+
Sbjct: 681 IEHFPFPNTSNSSDGRFSHSTGL 703
>01_06_0795 -
32051794-32053362,32053452-32053595,32054102-32054965,
32055335-32055892
Length = 1044
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = +3
Query: 117 HREWSHRATANDISSPRRKHLADPPDHNKLVAMARYVLHNSDWASLATI 263
+ EW+H A D +PRR AD D + R + H SL I
Sbjct: 112 YEEWAHAARMLDRETPRRATDADLYDEELVRNKLRELRHRRQEGSLRDI 160
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,625,364
Number of Sequences: 37544
Number of extensions: 339375
Number of successful extensions: 811
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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