Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_L24
         (534 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084158-7|AAK68560.1|  929|Caenorhabditis elegans Hypothetical ...    31   0.52 
Z82278-7|CAJ43451.1|  416|Caenorhabditis elegans Hypothetical pr...    27   8.5  
Z74044-1|CAA98550.1|  548|Caenorhabditis elegans Hypothetical pr...    27   8.5  
Z74039-11|CAA98508.1|  548|Caenorhabditis elegans Hypothetical p...    27   8.5  
AF100660-1|AAC68970.2|  442|Caenorhabditis elegans Hypothetical ...    27   8.5  
AF077307-1|AAC98095.1|  548|Caenorhabditis elegans acetyl cholin...    27   8.5  

>AC084158-7|AAK68560.1|  929|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.16 protein.
          Length = 929

 Score = 31.1 bits (67), Expect = 0.52
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -3

Query: 283 SIAGNTDIVANEAQSELCRTYLAIATNLLWSGGSAKCFRR 164
           +++   DIV N   S LC  +L ++ N+L    S+K +RR
Sbjct: 8   ALSNQEDIVGNAFTSRLCDRFLEVSENILSWNFSSKLYRR 47


>Z82278-7|CAJ43451.1|  416|Caenorhabditis elegans Hypothetical
           protein M162.11 protein.
          Length = 416

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 402 TRATVLVSLEETRYCEKMKYDAEDPRCTRLMLSGKMKKIK 521
           T A++ +       C+K+KY ++D     ++L GK  KI+
Sbjct: 146 TFASIQIDRPRWPDCDKIKYISQDDGSCNVVLGGKSSKIE 185


>Z74044-1|CAA98550.1|  548|Caenorhabditis elegans Hypothetical
           protein T26H10.1 protein.
          Length = 548

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 204 IYCGPEDRPNASDVGKIYR*LWLDETILYAS 112
           +Y  P+D  N +++   Y  +WL +T LY S
Sbjct: 87  LYWNPDDYENITELRLPYDSIWLPDTTLYNS 117


>Z74039-11|CAA98508.1|  548|Caenorhabditis elegans Hypothetical
           protein T26H10.1 protein.
          Length = 548

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 204 IYCGPEDRPNASDVGKIYR*LWLDETILYAS 112
           +Y  P+D  N +++   Y  +WL +T LY S
Sbjct: 87  LYWNPDDYENITELRLPYDSIWLPDTTLYNS 117


>AF100660-1|AAC68970.2|  442|Caenorhabditis elegans Hypothetical
           protein H35B03.1 protein.
          Length = 442

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 54  ISLCALNVYADGKWKGDRYEKHREW 128
           +++  +N   D +WK DR E+  EW
Sbjct: 99  VAIDRVNKLPDNEWKSDRLEQLNEW 123


>AF077307-1|AAC98095.1|  548|Caenorhabditis elegans acetyl choline
           receptor alpha subunitDES-2 protein.
          Length = 548

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 204 IYCGPEDRPNASDVGKIYR*LWLDETILYAS 112
           +Y  P+D  N +++   Y  +WL +T LY S
Sbjct: 87  LYWNPDDYENITELRLPYDSIWLPDTTLYNS 117


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,275,730
Number of Sequences: 27780
Number of extensions: 287110
Number of successful extensions: 730
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)