Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_L21
(489 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr... 235 2e-63
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|... 235 2e-63
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb... 235 2e-63
SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr 2|||... 119 2e-28
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 27 2.0
SPBC1105.02c |lys4||homocitrate synthase |Schizosaccharomyces po... 25 6.1
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce... 25 8.1
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc... 25 8.1
>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 136
Score = 235 bits (576), Expect = 2e-63
Identities = 115/126 (91%), Positives = 120/126 (95%)
Frame = +1
Query: 112 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 291
MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 292 L*IRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLCEDTNLCAIHAKRVTI 471
L IRKLPFQRLVREIAQDFKTDLRFQS+AIGALQEA EAYLV L EDTNLCAIH KRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTI 120
Query: 472 MPKDIQ 489
PKD+Q
Sbjct: 121 QPKDMQ 126
>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 136
Score = 235 bits (576), Expect = 2e-63
Identities = 115/126 (91%), Positives = 120/126 (95%)
Frame = +1
Query: 112 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 291
MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 292 L*IRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLCEDTNLCAIHAKRVTI 471
L IRKLPFQRLVREIAQDFKTDLRFQS+AIGALQEA EAYLV L EDTNLCAIH KRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTI 120
Query: 472 MPKDIQ 489
PKD+Q
Sbjct: 121 QPKDMQ 126
>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 136
Score = 235 bits (576), Expect = 2e-63
Identities = 115/126 (91%), Positives = 120/126 (95%)
Frame = +1
Query: 112 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 291
MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 292 L*IRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLCEDTNLCAIHAKRVTI 471
L IRKLPFQRLVREIAQDFKTDLRFQS+AIGALQEA EAYLV L EDTNLCAIH KRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTI 120
Query: 472 MPKDIQ 489
PKD+Q
Sbjct: 121 QPKDMQ 126
>SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr
2|||Manual
Length = 120
Score = 119 bits (287), Expect = 2e-28
Identities = 66/111 (59%), Positives = 84/111 (75%), Gaps = 10/111 (9%)
Frame = +1
Query: 187 ARKSAPSTGG--VKKPH--RYRPGTVALREIRRYQKSTEL*IRKLPFQRLVREIAQDF-- 348
A+KS + G + +P RYRPGT ALREIR+YQ+ST+L I++LPF R+VREI+ +F
Sbjct: 2 AKKSLMAEPGDPIPRPRKKRYRPGTTALREIRKYQRSTDLLIQRLPFSRIVREISSEFVA 61
Query: 349 --KTD--LRFQSAAIGALQEASEAYLVGLCEDTNLCAIHAKRVTIMPKDIQ 489
TD LR+QS A+ LQEA+EA+LV L EDTNLCAIHAKRVTIM +D+Q
Sbjct: 62 NFSTDVGLRWQSTALQCLQEAAEAFLVHLFEDTNLCAIHAKRVTIMQRDMQ 112
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 26.6 bits (56), Expect = 2.0
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 359 FVSSLLPLALCKRPVKPIWWVCVKTPTFAPS 451
F S+ PL + + I WVCV T FA S
Sbjct: 671 FTSNFAPLKFDNQALSVIIWVCVFTCKFAES 701
>SPBC1105.02c |lys4||homocitrate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 418
Score = 25.0 bits (52), Expect = 6.1
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 409 YLVGLCEDTNLCAIHAKRVTIMP 477
Y+ G+C T+ IHAK + P
Sbjct: 307 YITGMCAFTHKAGIHAKAILANP 329
>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 512
Score = 24.6 bits (51), Expect = 8.1
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 199 APSTGGVKKPHRYRPGTVALREIRRY 276
APS G K P P T+ + EIRR+
Sbjct: 25 APSGLGWKSPSLAEPFTLPISEIRRF 50
>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 735
Score = 24.6 bits (51), Expect = 8.1
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -1
Query: 366 ETKIGFKVLSNFSNESLERQLTDLQLRRF 280
+ + GFK + FSNE L+ +L + + +
Sbjct: 606 QQEFGFKYVQEFSNEDLQGKLIEANEKNY 634
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,093,538
Number of Sequences: 5004
Number of extensions: 40770
Number of successful extensions: 117
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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