Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_L20
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    31   0.13 
SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr 1||...    31   0.18 
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    28   0.94 
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    26   5.0  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    26   5.0  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   6.6  
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    25   8.8  

>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 17/52 (32%), Positives = 35/52 (67%), Gaps = 3/52 (5%)
 Frame = +2

Query: 59  VAELKKWQAEQEFKQIQEERRREKL---ENDLARQRILEQIAQDRAERRARD 205
           +A  ++ + E+E + ++E +RREKL   E +  R+ +LE+ ++++ ERR R+
Sbjct: 687 MAREQRLREEEEKRILEERKRREKLDKEEEERRRRELLEKESEEK-ERRLRE 737


>SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 197

 Score = 30.7 bits (66), Expect = 0.18
 Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
 Frame = +2

Query: 62  AELKKWQAEQEFKQIQEERRREKLENDLARQRILEQ--IAQDRAERRARDXXXXXXXXXX 235
           AEL++  A++  +++QE  ++EK+E ++   R+ EQ  +A D  E    D          
Sbjct: 104 AELEEKLAKRREQELQELEKQEKIEAEILESRLQEQRKVALDELELDRNDLKKVLDNKKS 163

Query: 236 XXXXTSGDANTGARIQFKLPDGTSHTAQFEAD 331
               T    +   R  + LP   +   Q +++
Sbjct: 164 YYLRTKTQPSLFYRPYYLLPSQRTQLEQMKSE 195


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 28.3 bits (60), Expect = 0.94
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +2

Query: 98   KQIQEERRREKLENDLARQRILEQIAQDRAER 193
            K +QE+   E   +D++R+ +L+ I Q+R +R
Sbjct: 1834 KALQEDEEEEGTHSDVSRKALLDIIGQERHDR 1865


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 9/30 (30%), Positives = 22/30 (73%)
 Frame = +2

Query: 65  ELKKWQAEQEFKQIQEERRREKLENDLARQ 154
           +L+K + E+E + ++EE+ ++K + +L R+
Sbjct: 105 KLQKKEKEEELRNLEEEKAKKKKDANLKRK 134


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +2

Query: 59  VAELKKWQAEQEFKQIQEERRREKLENDLARQRIL--EQIA 175
           +A+   W+  +++K I+ E RR + E     QR+   EQ+A
Sbjct: 175 LAKRTAWEIRKKWKVIEREVRRRRAERAAEAQRVAGKEQLA 215


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = +1

Query: 91  GVQTNTGGT*AREAGKRFG*AEDIGANSPGPSRTEGPG 204
           G  TNT        G  FG A   G+N  G + +  PG
Sbjct: 500 GANTNTATNATGTGGSLFGNANTAGSNMFGSANSSTPG 537


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 459 SKTLRVAVPSVSSRRGNAVQSENDD 385
           +K +RV +P     +GN V  EN+D
Sbjct: 470 AKVIRVGLPRGFKNKGNIVIDENED 494


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,082,599
Number of Sequences: 5004
Number of extensions: 36784
Number of successful extensions: 149
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)