Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_L18
         (513 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_1023 - 22341815-22342042,22342179-22342247,22342717-223428...    28   3.8  
06_01_0665 - 4855870-4855956,4856407-4856482,4856794-4856910,485...    28   3.8  
07_01_0652 + 4895366-4895483,4895661-4896262                           27   6.7  
05_07_0253 + 28692309-28692643,28693530-28693569,28693709-286937...    27   8.8  

>10_08_1023 - 22341815-22342042,22342179-22342247,22342717-22342840,
            22343193-22343317,22343815-22344276,22344357-22344700,
            22345061-22345406,22345492-22345941,22346760-22347051,
            22347171-22347515,22347611-22347834,22348072-22348563,
            22348664-22349056,22349601-22349741,22349845-22350207,
            22350494-22352683,22353298-22353360,22353434-22353535,
            22353672-22354027,22354326-22354413,22354517-22354750,
            22355508-22355975
          Length = 2632

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +1

Query: 25   TVTAWDFFKELEGVGQRVRDAIISAGPAIDVLQKAKDIADGR 150
            ++ A +  K + G G R RDA+++ G  + +++    I D R
Sbjct: 2466 SILALETLKRVVGAGNRARDALVAQGLKVGLVEVLLGILDWR 2507


>06_01_0665 -
           4855870-4855956,4856407-4856482,4856794-4856910,
           4857062-4857127,4858578-4858670,4858788-4858909,
           4859810-4860365,4860485-4860628,4860698-4860831,
           4861003-4861100,4861172-4861353,4861464-4861540,
           4862083-4862305,4862580-4862745,4862836-4863040,
           4864981-4865199
          Length = 854

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 428 NLNINTGMARLFSTIYNRRKYHIFMSIIY 342
           N+N+N G AR+ + I  RRKY   M  +Y
Sbjct: 486 NINMNVGNARM-TYIVKRRKYFYLMGYLY 513


>07_01_0652 + 4895366-4895483,4895661-4896262
          Length = 239

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -2

Query: 464 NKICNKYYSYNNNLNINTGMARLFSTIYN 378
           N+ICN Y+  NN  N++   A +   +++
Sbjct: 187 NQICNSYFGLNNGNNVSGTAASILLDVFH 215


>05_07_0253 +
           28692309-28692643,28693530-28693569,28693709-28693777,
           28694219-28694273,28694796-28694871,28695565-28695702,
           28697361-28697388,28698177-28698413,28698516-28698665,
           28698726-28698734
          Length = 378

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = -2

Query: 467 RNKICNKYYSYNN----NLNINTGMARLFSTIYNRRKYHIFMSIIY 342
           R  +C+  Y        N+N+N G AR+ + I  RRKY++    +Y
Sbjct: 178 RGSLCSTMYMKTRTLFMNINMNVGNARM-TYIVKRRKYYVCYISMY 222


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,271,202
Number of Sequences: 37544
Number of extensions: 160013
Number of successful extensions: 291
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)