Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_L16
         (360 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    24   0.41 
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   1.3  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       22   2.2  
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    21   5.1  

>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 0.41
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
 Frame = +3

Query: 114 ITFARRRPTCMYC----LLHL*RHTSPSKYYCKHLISTCASTFVTSLRLSTR 257
           +T  R RP    C    LL L   +SPS  + +HLI     T  T+   +TR
Sbjct: 239 VTSPRARPLARTCRDNRLLVLAGTSSPSNRFTRHLIQRRTHTRHTTTSHNTR 290


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 11/55 (20%), Positives = 22/55 (40%)
 Frame = -1

Query: 210 LSNVYNNTWRGTCDXXXXXXXTYR*VAAVQKLYLIF*WTYMRRCDVTXXXXRYKF 46
           ++++Y N  R  C         YR    ++K+Y+   W    + + T      K+
Sbjct: 217 VNSLYQNATRKVCGVWKRIPHDYRKRFRMEKIYVALVWGVKDQAEFTLSGQVMKY 271


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 238 HCVSLPGNDNVDNRCE 285
           HCV+LPG   V +RC+
Sbjct: 43  HCVNLPG---VGHRCQ 55


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory
          receptor candidate 1 protein.
          Length = 373

 Score = 20.6 bits (41), Expect = 5.1
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 43 CKLVAALLSCDVT 81
          C  VAAL+ C VT
Sbjct: 44 CTFVAALVYCSVT 56


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,580
Number of Sequences: 336
Number of extensions: 1639
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7299165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)