Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_L16
         (360 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    27   0.88 
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    24   6.2  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    24   6.2  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    24   8.2  

>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 27.1 bits (57), Expect = 0.88
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +2

Query: 68  LVTSHRLMYVH*KIRYNFCTAATYLYVLFVTFV---TSHVPLQVLL 196
           ++T   + Y    I +NF +  TY +VLF+ F    T  VP+  LL
Sbjct: 57  IITQIYVGYKTKNIGWNFFSVVTYCFVLFLQFAEQSTLRVPMASLL 102


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -3

Query: 346 CSIAWCDNKCMCDVCVCVL 290
           C + W + + +C VC C L
Sbjct: 655 CLLQWMETRSICPVCRCHL 673


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 98  GHT*GDVTSQDSNAATSLHDMSPPYK 21
           GH     TS   NA+ SL+D SP  K
Sbjct: 262 GHGMVQTTSDKVNASASLYDRSPSKK 287


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 87  SCMSTKRLGITFARRRPTCMYCLLH 161
           +C S ++  +  +  RP+C  CL H
Sbjct: 71  ACQSCRKKKVKCSGERPSCDQCLKH 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,344,180
Number of Sequences: 5004
Number of extensions: 23622
Number of successful extensions: 38
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)