Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_L16
         (360 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024838-4|AAF60819.1|   99|Caenorhabditis elegans Hypothetical ...    28   1.7  
AL023856-7|CAA19563.2|  326|Caenorhabditis elegans Hypothetical ...    26   6.9  

>AC024838-4|AAF60819.1|   99|Caenorhabditis elegans Hypothetical
           protein Y59E9AL.5 protein.
          Length = 99

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 120 FARRRPTCMYCLLHL*RHTSPSKYYCKHLISTCAST 227
           FA RRPTC  C +   + ++ +K   +   +TC+ T
Sbjct: 44  FASRRPTCCACWMRRKKESTTTKVCVQDDCTTCSCT 79


>AL023856-7|CAA19563.2|  326|Caenorhabditis elegans Hypothetical
           protein Y94A7B.1 protein.
          Length = 326

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 59  RYYLVTSHRLMYVH*KIRYNFCTAATYLYVLFVTFVTSHVP 181
           RYY++ S    + +  IRY+F T    L +LFV  V   +P
Sbjct: 116 RYYILFSMHTCWRY--IRYSFLTMNYVLTILFVITVYVEIP 154


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,768,983
Number of Sequences: 27780
Number of extensions: 147932
Number of successful extensions: 310
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)