Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_L15
(281 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch... 25 2.1
SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|... 24 3.6
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 24 3.6
SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10 |Schizo... 24 4.7
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 24 4.7
SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1... 24 4.7
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd... 24 4.7
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe... 23 6.3
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 23 6.3
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p... 23 8.3
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ... 23 8.3
>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 783
Score = 25.0 bits (52), Expect = 2.1
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +2
Query: 215 HPNYPPKAIRLPSRPWWEV 271
+PN PK L +R WW V
Sbjct: 397 NPNIDPKTKELRNRLWWSV 415
>SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 24.2 bits (50), Expect = 3.6
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 160 PSGKL*THKHWTGVRRFQSSQLSTQGDTTTLSPVVGSK 273
PS K+ K T + +S +++ G+TT P VGS+
Sbjct: 46 PSEKIDFPKKNTAHKNSTTSTVASSGNTTMEKPCVGSE 83
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 24.2 bits (50), Expect = 3.6
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Frame = +2
Query: 167 GNYEPI--STGPAFVDFNHPNYPPKAIR 244
G+Y P ST P + +P+YPP R
Sbjct: 117 GSYPPTQPSTQPLPQSYGYPSYPPAGYR 144
>SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 23.8 bits (49), Expect = 4.7
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +2
Query: 152 QTVLAGNYEPISTGPAFVDFNHPNYPPK 235
QT++ GN E + G N P Y PK
Sbjct: 102 QTIMTGNAEIVVAGGTESMSNAPYYAPK 129
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 23.8 bits (49), Expect = 4.7
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 88 PSDGNSDHVVIANPDPFFSQPSNGP 162
P+ GN D+ + P +SQPS P
Sbjct: 85 PAVGNQDYSKPSYSQPSYSQPSQPP 109
>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 386
Score = 23.8 bits (49), Expect = 4.7
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -1
Query: 209 NRRTPVQCLWVHNFPLGPFDG 147
++ TP++ L++HN LGP G
Sbjct: 119 SKHTPLEHLYLHNNGLGPQAG 139
>SPBC2G2.08 |ade9||C-1-
tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 969
Score = 23.8 bits (49), Expect = 4.7
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -3
Query: 93 RWNSVCGSHGQYGEEEKHES 34
RWN +C SH E+ + S
Sbjct: 517 RWNRICASHNMDPEDVNNAS 536
>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 23.4 bits (48), Expect = 6.3
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +2
Query: 65 PWLPQTEFHRT 97
PWL Q++FHR+
Sbjct: 381 PWLNQSQFHRS 391
>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 391
Score = 23.4 bits (48), Expect = 6.3
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1
Query: 200 TPVQCLWVHNFPLGP 156
TP QC+ +HN +GP
Sbjct: 227 TPEQCMLLHNELIGP 241
>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 752
Score = 23.0 bits (47), Expect = 8.3
Identities = 7/21 (33%), Positives = 15/21 (71%)
Frame = +1
Query: 100 NSDHVVIANPDPFFSQPSNGP 162
N D++ ++ DP +++PS+ P
Sbjct: 467 NGDNIEFSHFDPLYTRPSSHP 487
>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 23.0 bits (47), Expect = 8.3
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +2
Query: 176 EPISTGPAFVDFNHPNYP 229
+P S P+F+D N P+ P
Sbjct: 314 QPTSHVPSFIDTNSPSMP 331
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,179,892
Number of Sequences: 5004
Number of extensions: 20748
Number of successful extensions: 63
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 63619130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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