Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_L15
(281 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0219 + 15822050-15824896 29 0.73
02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704 26 5.2
01_07_0009 - 40397276-40397534,40397637-40398745,40398834-403989... 26 5.2
12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,398... 25 6.8
09_03_0141 + 12704611-12704987,12707391-12707760 25 6.8
04_04_0935 - 29509135-29511732 25 6.8
03_06_0599 + 34984869-34985319,34986581-34987563 25 6.8
03_02_0721 - 10677286-10678018,10679293-10679373,10682516-106826... 25 6.8
01_01_0608 - 4513604-4513701,4513790-4513919,4514027-4514116,451... 25 6.8
10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396 25 9.0
08_02_1187 - 25036023-25038443,25038636-25039939,25040033-25040135 25 9.0
03_05_0243 - 22275425-22276402,22277192-22277307,22277434-22279012 25 9.0
01_05_0645 - 23899579-23904483 25 9.0
>12_02_0219 + 15822050-15824896
Length = 948
Score = 28.7 bits (61), Expect = 0.73
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 5 DNSDTIRQ*KLSC-FSSSPYWPWLPQTEFHRTAIV 106
D D +R+ ++ C F+ P WPWL + T ++
Sbjct: 269 DFGDPLRKHEMHCRFTQGPPWPWLAVASSYGTLVI 303
>02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704
Length = 748
Score = 25.8 bits (54), Expect = 5.2
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -2
Query: 235 LGWIIGMIEIDERRSSAYGFIISR*DRLMVERRKDPG 125
L W++G E R +A G++ D V+ R PG
Sbjct: 242 LDWVVGKKTCREARRNATGYMCVSRDSECVDSRNGPG 278
>01_07_0009 -
40397276-40397534,40397637-40398745,40398834-40398932,
40399043-40399272,40399534-40399585,40399679-40399865,
40399987-40400193,40400283-40400449,40400804-40401094,
40401166-40401636
Length = 1023
Score = 25.8 bits (54), Expect = 5.2
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +2
Query: 14 DTIRQ*KLSC-FSSSPYWPWLPQTEFHRTAIV 106
D R+ ++ C F P WPWL T T ++
Sbjct: 369 DPSRKHEMHCRFEKKPPWPWLAITSSFGTLVI 400
>12_01_0503 -
3981603-3981730,3982858-3983023,3983057-3983139,
3983250-3983301,3983497-3983654,3983756-3985617,
3986029-3986093,3986176-3986340,3986836-3986893,
3987479-3987590,3987661-3987712,3988080-3988140,
3988220-3988377,3988705-3988787,3988897-3988945,
3989122-3989185,3990225-3990317,3990410-3990543,
3991364-3991585,3991815-3991937,3992103-3992267,
3993064-3993450
Length = 1479
Score = 25.4 bits (53), Expect = 6.8
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = +2
Query: 224 YPPKAIRLPSRPWW 265
YP + LP +PWW
Sbjct: 666 YPTPPLSLPRKPWW 679
>09_03_0141 + 12704611-12704987,12707391-12707760
Length = 248
Score = 25.4 bits (53), Expect = 6.8
Identities = 13/53 (24%), Positives = 24/53 (45%)
Frame = +1
Query: 88 PSDGNSDHVVIANPDPFFSQPSNGPSGKL*THKHWTGVRRFQSSQLSTQGDTT 246
P++G +D + A D + + SG+ + +GVRR + + TT
Sbjct: 196 PTEGGADSRLAAMRDAMVRRSATASSGRRSISRMLSGVRRSTNEETELSSSTT 248
>04_04_0935 - 29509135-29511732
Length = 865
Score = 25.4 bits (53), Expect = 6.8
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = -3
Query: 99 AVRWNSVCGSHGQYGEEEKHESFHCRIVSE 10
A+ WN++ G++ Q+G EE + ++S+
Sbjct: 468 AITWNAMLGAYIQHGAEEDGLKMYSAMLSQ 497
>03_06_0599 + 34984869-34985319,34986581-34987563
Length = 477
Score = 25.4 bits (53), Expect = 6.8
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 91 SDGNSDHVVIANPDPFFSQPSNGPSGKL*THK 186
SDG + V+A DP S+G +G + THK
Sbjct: 248 SDGGRWYAVLAVGDPSAPTTSSGINGAVITHK 279
>03_02_0721 -
10677286-10678018,10679293-10679373,10682516-10682645,
10682969-10683101
Length = 358
Score = 25.4 bits (53), Expect = 6.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 82 RVPSDGNSDHVVIANPDPFFSQPSNGPSG 168
R SD V+ +P+ SQP+NG SG
Sbjct: 210 RAQSDEARSGSVVVDPEEPSSQPNNGSSG 238
>01_01_0608 -
4513604-4513701,4513790-4513919,4514027-4514116,
4514225-4514330,4514442-4514542,4514678-4514773,
4514860-4514959,4515133-4515269,4515563-4515661,
4515740-4515937,4516058-4516235,4516635-4516690,
4516781-4516933,4517248-4517340,4517422-4517523,
4517609-4517650,4517812-4517855,4518087-4518186,
4518323-4518394,4518499-4518621,4519309-4519452
Length = 753
Score = 25.4 bits (53), Expect = 6.8
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -1
Query: 251 RVVVSPWVDNWDD 213
R+V WVD WDD
Sbjct: 471 RLVTEKWVDGWDD 483
>10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396
Length = 1357
Score = 25.0 bits (52), Expect = 9.0
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 206 DFNHPNYPPKAIRLPSRPWWE 268
D + P+Y PK++ LP + WE
Sbjct: 805 DNSFPSYLPKSMDLPGKTSWE 825
>08_02_1187 - 25036023-25038443,25038636-25039939,25040033-25040135
Length = 1275
Score = 25.0 bits (52), Expect = 9.0
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 206 DFNHPNYPPKAIRLPSRPWWE 268
D + P+Y PK++ LP + WE
Sbjct: 1162 DNSFPSYLPKSMDLPGKTSWE 1182
>03_05_0243 - 22275425-22276402,22277192-22277307,22277434-22279012
Length = 890
Score = 25.0 bits (52), Expect = 9.0
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 206 DFNHPNYPPKAIRLPSRPWWE 268
D + P+Y PK++ LP + WE
Sbjct: 777 DDSFPSYLPKSMDLPGKTSWE 797
>01_05_0645 - 23899579-23904483
Length = 1634
Score = 25.0 bits (52), Expect = 9.0
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 206 DFNHPNYPPKAIRLPSRPWWE 268
D + P+Y PK++ LP + WE
Sbjct: 1082 DNSFPSYLPKSMDLPGKTSWE 1102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,148,600
Number of Sequences: 37544
Number of extensions: 146870
Number of successful extensions: 324
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 279801164
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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