Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_L15
         (281 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003386-6|AAK82897.1|  527|Caenorhabditis elegans Hypothetical ...    27   2.1  
AF003386-2|AAB54255.1|  527|Caenorhabditis elegans Hypothetical ...    27   2.1  
U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical pr...    25   6.3  
AF016654-5|AAB66027.1|  348|Caenorhabditis elegans Hypothetical ...    25   6.3  
Z83107-6|CAD92391.1|  877|Caenorhabditis elegans Hypothetical pr...    25   8.4  
Z83107-4|CAB05498.1|  878|Caenorhabditis elegans Hypothetical pr...    25   8.4  
AL008868-1|CAA15515.2|  213|Caenorhabditis elegans Hypothetical ...    25   8.4  
AC006714-3|AAK29724.3|   82|Caenorhabditis elegans Hypothetical ...    25   8.4  

>AF003386-6|AAK82897.1|  527|Caenorhabditis elegans Hypothetical
           protein F59E12.4a protein.
          Length = 527

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = +1

Query: 97  GNSDHVVIANPDPFFSQPSNGPSGKL*THKHWT 195
           GN D  VI N DPF    S G  G +    H T
Sbjct: 476 GNDDIPVIPNGDPFSGSSSGGSGGAVWNCGHCT 508


>AF003386-2|AAB54255.1|  527|Caenorhabditis elegans Hypothetical
           protein F59E12.5a protein.
          Length = 527

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +1

Query: 97  GNSDHVVIANPDPFFSQPSNGPSGKL*THKHWT 195
           GN D  VI N DPF    S G  G + +  H T
Sbjct: 476 GNDDIPVIPNGDPFSGSSSGGSRGAVWSCGHCT 508


>U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical
           protein B0280.13 protein.
          Length = 616

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 179 PISTGPAFVDFNHPNYPPKAIRLPSR 256
           PISTGP++     P  P  A   PSR
Sbjct: 454 PISTGPSYSSTTPPTTPKPAPPPPSR 479


>AF016654-5|AAB66027.1|  348|Caenorhabditis elegans Hypothetical
           protein C17A2.3 protein.
          Length = 348

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 176 HNFPLGPFDG*EKKGSGFAITTWSLLPSD 90
           HN  L P+D  E +G G  + +  + PSD
Sbjct: 246 HNVRLCPYDRGEDRGMGRCLESVGITPSD 274


>Z83107-6|CAD92391.1|  877|Caenorhabditis elegans Hypothetical
           protein F32A7.5c protein.
          Length = 877

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +1

Query: 103 SDHVVIANPDP 135
           SDH++IA PDP
Sbjct: 519 SDHIIIATPDP 529


>Z83107-4|CAB05498.1|  878|Caenorhabditis elegans Hypothetical
           protein F32A7.5a protein.
          Length = 878

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +1

Query: 103 SDHVVIANPDP 135
           SDH++IA PDP
Sbjct: 519 SDHIIIATPDP 529


>AL008868-1|CAA15515.2|  213|Caenorhabditis elegans Hypothetical
           protein C53C7.3 protein.
          Length = 213

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 194 PAFVDFNHPNYPPKAIRL 247
           PAF D ++P++PP  + L
Sbjct: 182 PAFFDHHYPHFPPYELNL 199


>AC006714-3|AAK29724.3|   82|Caenorhabditis elegans Hypothetical
           protein Y119D3B.15 protein.
          Length = 82

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 257 GERVVVSPWVDNWDD 213
           GE   V+ W DNWDD
Sbjct: 45  GEEDDVNVWEDNWDD 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,641,016
Number of Sequences: 27780
Number of extensions: 119557
Number of successful extensions: 278
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 278
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 259761072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)