Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_L13
         (629 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.1  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   4.3  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   4.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.7  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   7.5  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 304 VVAGVSAFNFPVMIPLWMFPP 366
           VVA      +P ++P W  PP
Sbjct: 471 VVAAALTGTYPTLLPQWCLPP 491


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 240 GRFHTEYC*RYGYTQL*SALGCSRRCF 320
           GR   E+C   GY ++   LG + R F
Sbjct: 71  GRMFFEFCQDSGYDKILQVLGATPRDF 97


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 240 GRFHTEYC*RYGYTQL*SALGCSRRCF 320
           GR   E+C   GY ++   LG + R F
Sbjct: 71  GRMFFEFCQDSGYDKILQVLGATPRDF 97


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 476 TTPGGAPASCSSSINMTVAPGSCS 405
           T+P  A   C S IN + A GS S
Sbjct: 582 TSPNSAVRKCMSPINGSGASGSGS 605


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -3

Query: 612 YTFTSCRCSSVYMFA 568
           Y FT CRC   Y  A
Sbjct: 291 YGFTECRCDPGYFRA 305


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.132    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,855
Number of Sequences: 438
Number of extensions: 4497
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)