Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_L12
         (662 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    25   0.49 
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    24   1.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.1  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             24   1.1  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   3.4  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              23   3.4  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 264 YYTPERNPKEADYTAPIYAPQN 329
           Y+  E++PK+   T P  APQN
Sbjct: 302 YFRAEKDPKKMPCTQPPSAPQN 323


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +3

Query: 360 INYWIQNGAPTHKLVLGIST--TGRTWKLDSDSEISGV 467
           +++WI   A + ++ LGI+T  T  T  LDS +++  V
Sbjct: 264 VSFWIHREATSDRVGLGITTVLTLSTISLDSRTDLPKV 301


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 66  TTPVDDKESEHREGFTALV 122
           T P+DD  S+  EGF A++
Sbjct: 150 TNPLDDSISQANEGFCAVI 168


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 66  TTPVDDKESEHREGFTALV 122
           T P+DD  S+  EGF A++
Sbjct: 145 TNPLDDSISQANEGFCAVI 163


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +3

Query: 360 INYWIQNGAPTHKLVLGIST 419
           +++WI + A + ++ LGI+T
Sbjct: 261 VSFWINHEATSARVALGITT 280


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 14  DSFEYLIFLAQHQENIRDYPC 76
           DS E  I L   +EN R+Y C
Sbjct: 50  DSSEARIKLINEEENFRNYGC 70


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,595
Number of Sequences: 438
Number of extensions: 3947
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)