Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_L09
         (619 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    25   0.59 
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    25   0.59 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   4.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   5.5  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   5.5  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    22   5.5  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +3

Query: 36  CKSPNAAGR*HSSGRGCRHNGSKRQKRDSGAVLGFP 143
           C  P+      SS RG  HN     +  SG V GFP
Sbjct: 16  CTRPSRGNAVPSSQRGNVHNDPLVVETTSGLVRGFP 51


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +3

Query: 36  CKSPNAAGR*HSSGRGCRHNGSKRQKRDSGAVLGFP 143
           C  P+      SS RG  HN     +  SG V GFP
Sbjct: 16  CTRPSRGNAVPSSQRGNVHNDPLVVETTSGLVRGFP 51


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 581 IPSMISRSSLRVLPSFTVMTPSLPT 507
           IP+M + S +  LP+     P++PT
Sbjct: 420 IPNMSNMSGMPPLPNMPGSMPTMPT 444


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 156 RWSDSR*GGRTERQIPEHR 212
           RW+ S  GG  + +IP HR
Sbjct: 86  RWNVSDYGGVRDLRIPPHR 104


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = -2

Query: 210 DVLEFVFQFDPLSDCHSIFCDLR---GTPGLLQNHVSAFWTHCDGNRVR 73
           D+   V Q  P++    +  D++   G+P + Q+  S+  T C G+ VR
Sbjct: 250 DIEPTVQQHQPVTVNRQLNSDVQPGHGSPPVKQHRSSSASTTCSGHTVR 298


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 177 GGRTERQIPEHRCQISTKRCK 239
           G R E  +PE++C +  K  K
Sbjct: 48  GMRPECMVPEYQCAVKRKEKK 68


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.134    0.366 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,258
Number of Sequences: 438
Number of extensions: 3386
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)