Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_L07
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz...    28   1.4  
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git...    27   2.5  
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    27   3.3  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    27   3.3  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    26   4.4  
SPAC4F8.03 ||SPAC644.01c|SBDS family ribosome maturation protein...    25   7.7  
SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.7  

>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 277

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +1

Query: 466 FIAESPDQWTVLELNQPLYIGGVPDFDQLP 555
           F A SP  WT  + N P  I  VPD+   P
Sbjct: 187 FQAGSPYLWTRWQSNDPHLISSVPDYSARP 216


>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
           Git5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 305

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 517 LYIGGVPDFDQLPIDLAGASGFVRMYKHAD 606
           +Y   VPD D  P++L G +GFV   K+ D
Sbjct: 89  VYDTSVPDAD--PVELVGHAGFVSCCKYVD 116


>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 532 VPDFDQLPIDLAGASGFVRMYKHADTWQRREEHHGSSS 645
           VP F    +  A +S F R + H  T  R  E +GSS+
Sbjct: 450 VPSFSSPLVKPASSSSFGRSHSHLGTSLRSNELNGSSA 487


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 274  HYYIKSIRYNQ*VGRRLRYRTVYKHLSEKGVKA 176
            HYY+ ++  N      LR +T  +HL +  + A
Sbjct: 994  HYYVSAVLVNSEADTALRAKTTSQHLKQSAMAA 1026


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 580 FVRMYKHADTWQRREEHHGSSSRERKC 660
           +VR+  H   WQ+ EE  G    + KC
Sbjct: 866 YVRLLMHHGLWQKLEEFLGELRTQTKC 892


>SPAC4F8.03 ||SPAC644.01c|SBDS family ribosome maturation
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 246

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -3

Query: 577 QMLQRGQLEAGQSQEHHQ 524
           ++LQ+G  + G+ + HHQ
Sbjct: 86  EILQKGDFQVGEKERHHQ 103


>SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 269

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -2

Query: 170 SPSKRGTTPVTRRIALASIAFLLLE 96
           SPS   T+P+ R +   +++FLL++
Sbjct: 193 SPSSHSTSPMGRNVDTETLSFLLID 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.135    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,803,490
Number of Sequences: 5004
Number of extensions: 58109
Number of successful extensions: 141
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)