Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_L07
         (684 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1028 + 30230224-30231274,30231500-30231609,30232144-302321...    34   0.12 
08_02_1554 + 27841801-27842007,27842282-27842455,27842554-278426...    29   4.5  
11_04_0466 - 18028169-18028306,18028997-18029306,18029399-180295...    28   7.9  
10_02_0094 - 5228472-5228703,5229040-5229133,5230627-5230675,523...    28   7.9  
01_06_0840 + 32343700-32344138,32345329-32345419,32345584-323458...    28   7.9  

>04_04_1028 +
           30230224-30231274,30231500-30231609,30232144-30232170,
           30233107-30234252
          Length = 777

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 16/30 (53%), Positives = 18/30 (60%)
 Frame = -1

Query: 435 PGTGSADAYSVPFIKLQRSITFNFNNTSAS 346
           PGT   DAY +P    Q  +TF FN TSAS
Sbjct: 200 PGTACCDAYGMPLDDAQE-VTFEFNKTSAS 228


>08_02_1554 +
           27841801-27842007,27842282-27842455,27842554-27842653,
           27843273-27843725,27843936-27844469,27844500-27844580,
           27844690-27844781,27844890-27844963,27845071-27845293,
           27845429-27845522,27845607-27845761,27845899-27846129,
           27846803-27847003,27847257-27847382,27847497-27847558,
           27847775-27847892,27848040-27848324,27848475-27848513
          Length = 1082

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -1

Query: 609 SISMLIHPDKTRCSSEVNWKLVKVRNTTNVKRLIQ 505
           S ++L+HPD    +S  N +LV V + ++ KRL Q
Sbjct: 225 SYAVLVHPDTAARASISNLQLVTVSSKSSPKRLAQ 259


>11_04_0466 -
           18028169-18028306,18028997-18029306,18029399-18029513,
           18029596-18029732,18030198-18030520
          Length = 340

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 301 HSHPFCLDFHYYIKSIRYNQ*VGRRLRY 218
           H H  CL   Y I+S+ Y + +G+  RY
Sbjct: 43  HDHLNCLSHPYVIRSLGYGRGLGKHSRY 70


>10_02_0094 -
           5228472-5228703,5229040-5229133,5230627-5230675,
           5231229-5231321,5231404-5231635,5232416-5232506,
           5232693-5232784,5232862-5232970,5233331-5233430,
           5233614-5233754,5233846-5234010,5234088-5234279,
           5234409-5234537,5234619-5234734,5234821-5234965,
           5235039-5235102,5235241-5235463,5235584-5236244,
           5236909-5237250
          Length = 1089

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/56 (35%), Positives = 28/56 (50%)
 Frame = -1

Query: 654 SFSRARAMMFFSSLPSISMLIHPDKTRCSSEVNWKLVKVRNTTNVKRLIQF*YRPL 487
           S+S  R      S PS+S  +  D+T C ++V   +  V NTT V  +I   YR L
Sbjct: 140 SYSSRRTHENVFSEPSVSGRMTVDRTDCQTDVFSGVDTVNNTTQVGSVIST-YRSL 194


>01_06_0840 + 32343700-32344138,32345329-32345419,32345584-32345866,
            32346023-32346097,32346470-32346514,32346889-32346979,
            32347060-32347118,32347621-32347704,32348109-32348168,
            32348585-32348637,32348724-32348757,32349334-32350335,
            32350477-32351035,32351873-32352372,32352793-32353200
          Length = 1260

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 217  DIEVSFRPTDYNGLILYNSENQGRTGDYVALQLVEGT-PQFLLET 348
            +  +SFR T  N L++Y+   +G  G Y+    V G+ P  +L T
Sbjct: 1004 NFNLSFRKTSGNPLVIYDEITRGDGGMYIKNSSVVGSYPLIILAT 1048


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.135    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,943,769
Number of Sequences: 37544
Number of extensions: 371701
Number of successful extensions: 943
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)