Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_L06
(485 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 31 0.12
SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||... 29 0.49
SPBC1685.16 |vma9||V-type ATPase subunit e|Schizosaccharomyces p... 28 0.65
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 27 2.0
SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|c... 27 2.0
SPAC19D5.06c |din1||Dhp1p-interacting protein Din1|Schizosacchar... 26 2.6
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 26 3.5
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ... 25 4.6
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation... 25 4.6
SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr... 25 6.1
>SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 172
Score = 30.7 bits (66), Expect = 0.12
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = -2
Query: 484 FSFCFLLIEVYLIMKRKY-NFRCIFLLSLLFCAFSQF 377
FSF +LL+ V L + +Y F+ + LLSL +CA+ +
Sbjct: 51 FSFLYLLLIVPLFLYPEYWAFKLVELLSLFYCAYVMY 87
>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 454
Score = 28.7 bits (61), Expect = 0.49
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = -3
Query: 198 FI*AMYTVTQKSHIQNADSIMQVLMTPLFSPLRTTNGPIINIAPKIAVIT*IGV*NVSTS 19
FI ++ ++H++N DS+ Q++ T PL + I P+I+ I I + N +T
Sbjct: 218 FIRRTLSIQSETHVKNIDSLQQIVPTIPHLPLNLVQ---LKITPEISAIRTILI-NKNTH 273
Query: 18 P 16
P
Sbjct: 274 P 274
>SPBC1685.16 |vma9||V-type ATPase subunit e|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 33
Score = 28.3 bits (60), Expect = 0.65
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 137 IMLSAFCMWLFWVTVYIAQMNPL 205
++L+ C +L W Y+AQ++PL
Sbjct: 3 LILTFSCCYLLWAITYLAQLHPL 25
>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 26.6 bits (56), Expect = 2.0
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -1
Query: 329 YELCNSLNILYFISYFSILNLRVRPNYELSRLGSCWTY 216
Y+L +++ L+++ + I+ L L R+ CWTY
Sbjct: 126 YKLSSAMASLHYLKFVKIIALSYICFSSLIRICHCWTY 163
>SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 315
Score = 26.6 bits (56), Expect = 2.0
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -1
Query: 233 GSCWTYEAPSTDSSELCTLSPKKATY 156
G W Y+ S SS+LC SP K Y
Sbjct: 204 GHYWGYKVRSCLSSQLCKSSPYKGGY 229
>SPAC19D5.06c |din1||Dhp1p-interacting protein
Din1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 352
Score = 26.2 bits (55), Expect = 2.6
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 181 VHSSDESVDGASYVQHEPNLDSS*LGRTRKLRIEKYEMKYNMFK 312
VHS D +++ + PNL L ++K +E Y M+ + K
Sbjct: 216 VHSDDGTIEEDASNAENPNLHYVELKTSKKYPLENYGMRKKLLK 259
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 25.8 bits (54), Expect = 3.5
Identities = 11/44 (25%), Positives = 18/44 (40%)
Frame = +2
Query: 92 LVVRKGENRGVIRTCIMLSAFCMWLFWVTVYIAQMNPLMGLRMS 223
L +N G + C L + W+ W+ + + P M L S
Sbjct: 197 LAYSNAKNYGTVGLC--LQVYAQWVSWININLIVNEPCMNLLYS 238
>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 805
Score = 25.4 bits (53), Expect = 4.6
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -2
Query: 481 SFC-FLLIEVYLIMKRKYNFRCIFLLSLLF 395
+FC FL + Y KRK + +F+ SL+F
Sbjct: 537 TFCLFLSLSNYRFFKRKLDIYAVFVPSLIF 566
>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
specificity factor complex subunit
Pta1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.4 bits (53), Expect = 4.6
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = -1
Query: 317 NSLNILYFISYFSILNLRVRPNYELSR--LGSCWTYEAPS-TDSSEL 186
+SLN+LY S +IL + V+ EL+ +GS + P+ D EL
Sbjct: 204 DSLNVLYITSVLNILPVLVKRRKELAPKIIGSLLEFHLPNPKDEIEL 250
>SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 323
Score = 25.0 bits (52), Expect = 6.1
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 262 TRKLRIEKYEMKYNMFKEL 318
TR L+I +Y M+ N+ KEL
Sbjct: 119 TRTLKIARYRMRQNLEKEL 137
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,098,913
Number of Sequences: 5004
Number of extensions: 43611
Number of successful extensions: 99
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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