Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_L06
         (485 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0583 - 19684388-19684498,19685083-19685216,19685765-196858...    33   0.16 
11_01_0479 - 3695245-3696588,3696705-3696965                           30   0.86 
09_03_0133 - 12643343-12643552                                         30   0.86 
02_01_0116 + 862401-862734,862823-863078,863177-863311,863395-86...    29   2.0  
02_05_0442 - 29044736-29046604                                         28   4.6  
05_04_0224 - 19198722-19198835,19198947-19199436,19200478-192006...    27   6.0  

>07_03_0583 -
           19684388-19684498,19685083-19685216,19685765-19685888,
           19685982-19686251,19686961-19687155,19687236-19687328,
           19687411-19687539,19687646-19689277
          Length = 895

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
 Frame = -1

Query: 371 GKSRGTNDIKTETSYELCN----SLNILYFISYFSILNLRVRPNYEL--SRLGSCWTYEA 210
           G+++   ++K E  +EL +    SLN+LY +  F I+N RVRP   L  S  GSC   + 
Sbjct: 308 GRTKILREVK-EIVFELIDLEVVSLNLLYIMHKF-IMN-RVRPVAPLVVSMCGSCGIGQL 364

Query: 209 PSTDSSELCTL 177
            ST   ELC L
Sbjct: 365 SSTHLQELCEL 375


>11_01_0479 - 3695245-3696588,3696705-3696965
          Length = 534

 Score = 30.3 bits (65), Expect = 0.86
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -2

Query: 142 HYAGSYDSSVLSFTYN*RSNNKYRAENSSDHVNRCIECFHLPVS 11
           HY   Y  S++S  +N  SN KY + N++  +N  I   +LP S
Sbjct: 403 HYGDDYLPSMISDYFN--SNGKYTSHNATTSINDLIVTNYLPQS 444


>09_03_0133 - 12643343-12643552
          Length = 69

 Score = 30.3 bits (65), Expect = 0.86
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 236 LGSCWTYEAPSTDSSELCTLS 174
           LG CW ++ PS ++   CT+S
Sbjct: 33  LGDCWVWDCPSAEADGCCTMS 53


>02_01_0116 +
           862401-862734,862823-863078,863177-863311,863395-864721
          Length = 683

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +3

Query: 324 FVRSFSFYIVCST*LAHKNCENAQNNKERRKIHRKLYFLFIIKYTSI 464
           F   F  YI+     A     NAQNN E     R + FLF+I +  +
Sbjct: 110 FTGGFGTYILAMGKKAAVGDVNAQNNVEEPSFARMITFLFLISFAGM 156


>02_05_0442 - 29044736-29046604
          Length = 622

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 179 VYIAQMNPLMGLRMSNTSLIWIA 247
           V   QMNPL G+ ++NTSL + A
Sbjct: 250 VLTGQMNPLEGVGLANTSLAYFA 272


>05_04_0224 -
           19198722-19198835,19198947-19199436,19200478-19200641,
           19202534-19202632,19204069-19204175,19204278-19204401,
           19205113-19205242,19205314-19205433,19205861-19206002,
           19207243-19207326,19207651-19207742,19207855-19207944,
           19208057-19208136,19208312-19208451,19208587-19209067
          Length = 818

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = -3

Query: 165 SHIQNADSIMQVLMTPLFSP-LRTTNGPII-NIAPKI 61
           SH  +A  +MQVL  PLF P L  +NG ++ ++ P +
Sbjct: 180 SHQISASIVMQVLFYPLFGPALLFSNGNVLCHVLPSL 216


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,579,124
Number of Sequences: 37544
Number of extensions: 237618
Number of successful extensions: 553
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)