Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_L06
         (485 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68227-12|CAA92517.2|   86|Caenorhabditis elegans Hypothetical p...    72   3e-13
Z66511-4|CAA91316.1|  813|Caenorhabditis elegans Hypothetical pr...    29   1.4  
Z74472-6|CAA98947.1| 1025|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z48009-7|CAA88083.1|  329|Caenorhabditis elegans Hypothetical pr...    27   7.2  
U41556-11|AAK39190.2|  365|Caenorhabditis elegans Hypothetical p...    27   9.5  
AF039051-2|AAB94262.1|  413|Caenorhabditis elegans Nuclear hormo...    27   9.5  
AC084158-16|AAK68571.2|  347|Caenorhabditis elegans Hypothetical...    27   9.5  

>Z68227-12|CAA92517.2|   86|Caenorhabditis elegans Hypothetical
           protein F49C12.13 protein.
          Length = 86

 Score = 71.7 bits (168), Expect = 3e-13
 Identities = 26/77 (33%), Positives = 48/77 (62%)
 Frame = +2

Query: 41  PIYVITXXXXXXXXXXPLVVRKGENRGVIRTCIMLSAFCMWLFWVTVYIAQMNPLMGLRM 220
           P+  ++          P +V KG NRG+I+  I+++A C W+FW+ V++ Q+NPL+G ++
Sbjct: 6   PLVSVSAFWAIIGFGGPWIVPKGPNRGIIQLMIIMTAVCCWMFWIMVFLHQLNPLIGPQI 65

Query: 221 SNTSLIWIAHNWGEPAN 271
           +  ++ WI+  WG+  N
Sbjct: 66  NVKTIRWISEKWGDAPN 82


>Z66511-4|CAA91316.1|  813|Caenorhabditis elegans Hypothetical
           protein F07A11.3 protein.
          Length = 813

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = -1

Query: 425 SMYLPSFFIVLCVFTIFMGKSRGTNDIKTETSYELCNSLNILYFI-SYFSILNLRV 261
           +++LP FFI+L    + +  +   ND  T  + +L      + FI ++++ LNL+V
Sbjct: 757 NLFLPQFFILLAQAAVRLDDTTNFNDFFTSFNNDLGLDQEWMVFIKAFYAELNLKV 812


>Z74472-6|CAA98947.1| 1025|Caenorhabditis elegans Hypothetical
           protein F23H12.6 protein.
          Length = 1025

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 336 FSFYIVCST*LAHKNCENAQNNKE 407
           +SF IVCS  + H +  N +N KE
Sbjct: 694 YSFSIVCSELVGHSSAWNLENRKE 717


>Z48009-7|CAA88083.1|  329|Caenorhabditis elegans Hypothetical
           protein AH6.10 protein.
          Length = 329

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = -2

Query: 406 SLLFCAFSQFLWASHVEQTI*KLKLLTNYVIP*TYY--ISFHISLSLICGFAPIM 248
           ++ F A SQFLW       I  L+++   ++P T+Y  I++  ++  I    P++
Sbjct: 237 AICFLALSQFLWMFMYSFGILILRIIREDILPSTFYFWIAWCYTMPFIALMFPVL 291


>U41556-11|AAK39190.2|  365|Caenorhabditis elegans Hypothetical
           protein C25B8.5 protein.
          Length = 365

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 161 WLFWVTVYIAQMNPLMGLRMSNTSLIW 241
           W+ WV VY+  +NP++   +  TSLI+
Sbjct: 245 WIAWVLVYLLTLNPIINPLI--TSLIY 269


>AF039051-2|AAB94262.1|  413|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 155 protein.
          Length = 413

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 183 YTVTQKSHIQNADSIMQVLMTPLFSPLRTTNGP 85
           YT T+ + + +++S   V  TPL SP+ +T  P
Sbjct: 159 YTTTRHAALPSSNSTSSVESTPLSSPVDSTADP 191


>AC084158-16|AAK68571.2|  347|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.26 protein.
          Length = 347

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 245 LSRLGSCWTYEAPSTDSSELCTLSPKKAT 159
           +S LGS  +   PS+ +SELC +   KA+
Sbjct: 1   MSSLGSTTSSSTPSSQTSELCAVCGGKAS 29


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,481,607
Number of Sequences: 27780
Number of extensions: 235591
Number of successful extensions: 630
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)