Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_L04
         (591 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...   151   7e-38
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    29   0.67 
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    25   8.3  

>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score =  151 bits (366), Expect = 7e-38
 Identities = 83/193 (43%), Positives = 108/193 (55%), Gaps = 1/193 (0%)
 Frame = +3

Query: 15  GLNELNQYLAERSYVSGYTPSQADIKVFEQVGKVP-AASLPHVLRWYSHIASYTPAERKT 191
           GL +LN +L ++S++ GY PSQAD  VF+ VG  P  A  P+  RWY  IA+Y  A    
Sbjct: 11  GLKQLNDFLLDKSFIEGYEPSQADAVVFKAVGVAPDTAKYPNGARWYKQIATYDLATLPG 70

Query: 192 WSEGVSXXXXXXXXXXXXXXSNXXXXXXXXLFGSGXXXXXXXXXXXXXXXLKAYADKKSK 371
            ++ VS               +        LFGS                +  Y  KK+ 
Sbjct: 71  TAKEVSAYGPEGAAAAEEDEID--------LFGS-DEEEDPEAERIKAERVAEYNKKKAA 121

Query: 372 KPALIAKSSIILDVKPWDDETDMKEMENQVRTIEMDGLLWGASKLVPVGYGINKLQIMCV 551
           KP  + KS + LDVKPWDDET M E+E  VR+I+MDGL+WG SKLVPVG+G+NK QI  V
Sbjct: 122 KPKAVHKSLVTLDVKPWDDETPMDELEKAVRSIQMDGLVWGLSKLVPVGFGVNKFQINLV 181

Query: 552 IEDDKVSVDLLTE 590
           +EDDKVS++ L E
Sbjct: 182 VEDDKVSLEALQE 194


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 28.7 bits (61), Expect = 0.67
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = -1

Query: 477 PFQLCALGFPFLSYLSHHPMVL--HQGL*RTLQ 385
           P+QL  L + +L + +HHP +L    GL +T+Q
Sbjct: 558 PYQLKGLNWLYLRWYTHHPCILADEMGLGKTVQ 590


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 357 DKKSKKPALIAKSSIILDVKPWDDETDMKEME 452
           DK+S  P LIA++ +  ++   D+   +KE E
Sbjct: 692 DKESNSPVLIAETRLFNNLFKCDNPAALKEQE 723


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,135,032
Number of Sequences: 5004
Number of extensions: 38467
Number of successful extensions: 88
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)