Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_L02
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    29   0.39 
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    27   2.1  
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    27   2.1  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   4.8  
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    25   6.3  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    25   6.3  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   8.3  

>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 23/72 (31%), Positives = 37/72 (51%)
 Frame = -1

Query: 347 PVFPEGLGRGEVANYTTHISPSLVPSQM*QGASLSPYRAQIPNSGMILSRKNPISLDPTR 168
           P +P+ LG G +++YT   + +L PS   +  +     +  P SG IL+   P +LD + 
Sbjct: 238 PPYPQMLGPGSISSYT---NSNLGPSAGFRPPTFFSSPSPQPYSGPILASTAP-TLDGSY 293

Query: 167 GSNPRPQNGSRM 132
            SNP   N + M
Sbjct: 294 LSNPSNSNPAVM 305


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
 Frame = -1

Query: 347 PVFPEGLGRGEVANYTTHISPS-----LVPSQM*QGASLSPYRAQIPNSGM-ILSRKNPI 186
           P  P  +    VA+YT   SPS      +P++    A+ + Y +  PN+     S  NP+
Sbjct: 76  PQHPASINSRRVASYTVQSSPSRTTYRQLPNEPQNSAAYTTY-SSFPNALFDDFSPNNPL 134

Query: 185 SLDPTRGSNPRPQN 144
             DP   S    QN
Sbjct: 135 DTDPFLTSPGNKQN 148


>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 416 YFTIKYIYQVTALIIYTYIHMLTPVFPEGLGR 321
           YFT++ +     +IIY+Y ++L P   E + R
Sbjct: 191 YFTVRRMLPFCNVIIYSYHYLLDPKIAERVSR 222


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -1

Query: 434 YASLDDYFTIKYIYQVTALIIYTYIHMLTPVFPEGLGRG 318
           YA +D YF I+Y++   AL I   + +   + P     G
Sbjct: 81  YAGVDGYFFIRYLFTFGALCILGCLVLFPILLPVNATNG 119


>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/47 (27%), Positives = 28/47 (59%)
 Frame = +2

Query: 155  SDSIPGSGQVILGFFYSVSSRSLEFVLDMATSSPPVTSGTELSSAKC 295
            S +IPG+ +VIL    ++ + ++   +  ++SS PV++   + +A C
Sbjct: 959  SGTIPGTVEVILPAPTTIYTGTVATTITYSSSSTPVSTVVVIPTAVC 1005


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 393 PSNSSNNIYIHTYAHACFPRRV-RQR*SSELHHPHFAELSSVP 268
           PSN +NNI   +Y HA    ++  QR +      +F+   S+P
Sbjct: 266 PSNFNNNIQSSSYGHASQSTKLTSQRDNDHQKDLNFSPYKSIP 308


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 58  YTTQNATKITHYSCNTTASVAQLY 129
           YT QN T    Y C+++ SV   Y
Sbjct: 635 YTNQNRTTTLDYQCSSSNSVVSPY 658


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,332,583
Number of Sequences: 5004
Number of extensions: 48430
Number of successful extensions: 116
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)