Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_L02
         (593 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0355 + 16922863-16924224                                         28   6.5  
05_05_0126 + 22574191-22575567                                         28   6.5  
03_01_0382 + 2961665-2961672,2962504-2962557,2962935-2963004,296...    28   6.5  
01_06_1342 - 36438869-36439459,36439567-36439627,36440751-364411...    28   6.5  
01_06_1174 - 35126903-35127015,35127096-35127160,35127417-351275...    28   6.5  
01_01_0328 - 2664412-2664535,2665388-2665465,2667784-2667895,266...    27   8.5  

>09_04_0355 + 16922863-16924224
          Length = 453

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 6/42 (14%)
 Frame = +2

Query: 209 SSRSLEFVLDMATSSPP------VTSGTELSSAKCGWCSSLL 316
           +S  LE+VLD+A  +PP      + +G++L   +C  C++ L
Sbjct: 92  ASGDLEYVLDLAVGTPPQPITALLDTGSDLIWTQCDTCTACL 133


>05_05_0126 + 22574191-22575567
          Length = 458

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 6   RAHYLKFTSIVHNDQKKLYYAKC 74
           R HY K   + H D+  LY+A C
Sbjct: 135 RGHYNKTFPVTHPDEYSLYFANC 157


>03_01_0382 +
           2961665-2961672,2962504-2962557,2962935-2963004,
           2963141-2963386,2967246-2967491,2968837-2968888,
           2969270-2969651,2970527-2970681,2971389-2971713,
           2975803-2975871,2976189-2976346,2976444-2976551,
           2976659-2977131
          Length = 781

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 174 DPGIESETSERQSYVIQLRYRGSRITTVVRDFGGILRS 61
           DPG E+ T   + Y  + R+RG R+ T     G I +S
Sbjct: 712 DPGYEAVTVALEKYAEERRWRGIRLITAAYVVGFIQQS 749


>01_06_1342 -
           36438869-36439459,36439567-36439627,36440751-36441130,
           36441955-36442761
          Length = 612

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = -1

Query: 311 ANYTTHISPSLVPSQM*QGASLSPYRAQIPNSGMILSRKNPISLDPTRGSNPRPQNG 141
           ++Y+ H SP+L  +Q+     L+P   QIP     LS  +  S  P   + PR Q G
Sbjct: 112 SSYSPH-SPTLAQAQL-VAHGLAPPLPQIPTQNFSLSLSSASSNPPPPQAQPRRQLG 166


>01_06_1174 -
           35126903-35127015,35127096-35127160,35127417-35127503,
           35128560-35128731,35128874-35128919
          Length = 160

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 250 LAPCHIWDGTKLGEMW 297
           L PCH+ +G  LG MW
Sbjct: 76  LRPCHVGEGIVLGSMW 91


>01_01_0328 -
           2664412-2664535,2665388-2665465,2667784-2667895,
           2668344-2668410,2668473-2668562,2668672-2668787,
           2668999-2671924
          Length = 1170

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 13  IILNSLQLCTMTKRSYTTQNATKITHYSCNTTASVAQLYYIRLP 144
           ++ NSL+L  +  R     N   ITHY  N    + Q+Y +  P
Sbjct: 693 VLRNSLRLRELWFRCTMGANTHDITHYQMNEIERIQQVYEMLSP 736


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,728,019
Number of Sequences: 37544
Number of extensions: 309789
Number of successful extensions: 753
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)