Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_K24
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    27   3.1  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    27   3.1  
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    27   3.1  
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    27   3.1  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    26   5.4  
SPAC6G10.03c |||abhydrolase family protein, unknown biological r...    25   9.4  

>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/56 (23%), Positives = 23/56 (41%)
 Frame = -3

Query: 398 FPFYILLRSKWIFSFGVNFWVFPKGFICFPIYIPERLTVHRQCVQTIYEIPITFCF 231
           F  Y+L ++  +FS   +F   P  F  F + I   +  +  C   +Y      C+
Sbjct: 575 FKSYVLFKNNLVFSETKHFGTTPVSFRRFTMNIGTYIICNNDCPHMVYGFNGALCY 630


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 218 FVTSKPVHDKI*FDRWIPYWTNAGVKRP 135
           FVT++     I  D W+ +WTN+ V  P
Sbjct: 904 FVTTQAT--SILIDLWVAFWTNSSVNSP 929


>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 295 KG*LSTGNAFKRFTKFLSPFASTGMGSLPPNLFTI 191
           KG L T  + ++    L P+A     SLPP+L+ I
Sbjct: 578 KGELKTAKSLRQTYLSLLPYAQVANFSLPPSLYEI 612


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 413 YQERACAKKLFPSVNSNEFE-FTNKHKDFTIVLY 511
           Y      KK  PS+NS EFE  +N ++DF   L+
Sbjct: 886 YMLMEALKKNSPSLNSEEFEHLSNLYRDFRSKLF 919


>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = -2

Query: 465  SFEFTDGN-SFFAHALS*YINIMISFLYITEE*MDFFVRGKLLGFS*RLHMLSNLYTRKV 289
            S  FTD    F    +    N+++  +    E   + V G LL  S   H+L+ L  +K+
Sbjct: 1883 SASFTDAALRFIVDHIGQQTNLLLEIVNYNVENQQYVVSGNLLSLSTLGHVLNFLKVQKI 1942

Query: 288  D 286
            D
Sbjct: 1943 D 1943


>SPAC6G10.03c |||abhydrolase family protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 428

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 276 AMRSNDLRNSYHLLLRQAWVRYLQTCS 196
           A+RS +  NSY      +W ++ Q CS
Sbjct: 7   AVRSEEAANSYTQTFGMSWRQWRQACS 33


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,524,368
Number of Sequences: 5004
Number of extensions: 50892
Number of successful extensions: 118
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)