Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_K24
         (649 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93380-4|CAB07597.1|  339|Caenorhabditis elegans Hypothetical pr...    32   0.30 
Z92781-2|CAB07181.2|  397|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AF003384-6|AAB54238.2|  451|Caenorhabditis elegans Coenzyme q (u...    27   8.7  

>Z93380-4|CAB07597.1|  339|Caenorhabditis elegans Hypothetical
           protein F28C12.5 protein.
          Length = 339

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 23/94 (24%), Positives = 44/94 (46%)
 Frame = -3

Query: 494 NLCVYS*IQIHSNLQMEIASLHMLFLDTSIL*FPFYILLRSKWIFSFGVNFWVFPKGFIC 315
           ++C  +  ++ S+ + +    H  F+  S+L     + L S +I  +GV+      G++ 
Sbjct: 126 SVCSLAFDRLVSHYKSKFYHTHQYFIAVSLLVLQLLLTLVSFYIAYYGVHL----AGYVP 181

Query: 314 FPIYIPERLTVHRQCVQTIYEIPITFCFDRHGFV 213
             I+ P RL VH   V T+  + +  C    GF+
Sbjct: 182 VCIHYP-RLAVHYSTVNTVRTVVMVCCLVVTGFI 214


>Z92781-2|CAB07181.2|  397|Caenorhabditis elegans Hypothetical
           protein F09C3.3 protein.
          Length = 397

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +3

Query: 177 VESDFIVNRFGGNEPMP-VEAKGDRNFVNRLNALPVDSQPFWYINWKAYEAFRKNPKV 347
           VE+ F+ N+  G      +   GDR+    ++  P+D + + +  W+  E +RK PK+
Sbjct: 71  VEAKFMDNKSAGFWIYTDITTGGDRDCSETMS--PLDGKYYGHGRWRVAEKYRKMPKI 126


>AF003384-6|AAB54238.2|  451|Caenorhabditis elegans Coenzyme q
           (ubiquinone) biosynthesisprotein 6 protein.
          Length = 451

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -1

Query: 271 AFKRFTKFLSP-FASTGMGSLPPNLFTIKSDSTAGYPIG 158
           A  R   F +  F     G+ PP++ T++  S A +P+G
Sbjct: 292 ALNRMNPFRTETFGRKAEGTTPPHVITVQDKSRASFPLG 330


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,696,855
Number of Sequences: 27780
Number of extensions: 276504
Number of successful extensions: 615
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)