Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_K23
         (545 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0120 + 912312-912615,913145-913371,913507-913754,914293-91...    27   9.8  
01_06_0851 + 32455364-32458050,32458883-32458922                       27   9.8  

>12_01_0120 +
           912312-912615,913145-913371,913507-913754,914293-914656,
           914758-915154,915671-915693,916645-916987,917513-917532,
           918418-918527,919484-920255
          Length = 935

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 374 GTVAMFK*NLFDALSFHFKYWS*NGVRSKIYGVIYLYKT 490
           G+  MF  N    L  +F +WS      ++YG IYLY T
Sbjct: 77  GSTDMFSSNYVATLFPYFLHWS------RVYGSIYLYST 109


>01_06_0851 + 32455364-32458050,32458883-32458922
          Length = 908

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +1

Query: 16  TPGMELWYCGKETPPSSYSCVNGIQ 90
           TP MEL +  ++  P++Y+ VNGI+
Sbjct: 179 TPTMELTFTPEKGHPNAYAFVNGIE 203


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,033,659
Number of Sequences: 37544
Number of extensions: 225672
Number of successful extensions: 386
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)