Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_K23
         (545 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50069-2|AAB37558.1|  328|Caenorhabditis elegans Hypothetical pr...    29   1.7  
AF025457-3|AAB70963.2|  248|Caenorhabditis elegans Hypothetical ...    29   1.7  
AC025726-3|AAK73917.2|  337|Caenorhabditis elegans Hypothetical ...    27   6.7  
U80445-2|AAB37795.2| 1029|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>U50069-2|AAB37558.1|  328|Caenorhabditis elegans Hypothetical
           protein C09B9.2 protein.
          Length = 328

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 445 WGEVQNLWSYLFVQNFLRLRANFVI 519
           WGEV++LW+YL       L A FV+
Sbjct: 91  WGEVRDLWAYLAEIMMFELIAGFVL 115


>AF025457-3|AAB70963.2|  248|Caenorhabditis elegans Hypothetical
           protein C08E3.5 protein.
          Length = 248

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 351 NFLKNMYEERLQCLNEIYSMRFH 419
           N+L   Y E+L C++ +Y+MR+H
Sbjct: 54  NWLTLNYSEKLHCVSIVYNMRYH 76


>AC025726-3|AAK73917.2|  337|Caenorhabditis elegans Hypothetical
           protein Y71G12B.18 protein.
          Length = 337

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 9/24 (37%), Positives = 19/24 (79%)
 Frame = -3

Query: 417 ESASNKFHLNIATVPHTYSSENSL 346
           E+  +KFHLN++++P+++ S + L
Sbjct: 114 ENDYSKFHLNVSSLPYSFKSMSDL 137


>U80445-2|AAB37795.2| 1029|Caenorhabditis elegans Hypothetical
           protein C50F2.2 protein.
          Length = 1029

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -3

Query: 246 SH*SFTIKMILNK*DCRSNPRTNSNSKMAAPNNEPFLK 133
           SH  F +K I  K D  S P+T S S  + PN +P +K
Sbjct: 456 SHFEFKVKPIEKK-DA-SPPKTTSTSSASPPNPDPAMK 491


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,002,961
Number of Sequences: 27780
Number of extensions: 234799
Number of successful extensions: 505
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)