Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_K20
(634 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 153 3e-38
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 58 1e-09
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 54 2e-08
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 51 1e-07
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 49 6e-07
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 46 3e-06
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 46 5e-06
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 45 8e-06
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 44 1e-05
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 44 2e-05
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 43 4e-05
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 43 4e-05
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 41 2e-04
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 40 2e-04
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 40 3e-04
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 40 4e-04
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 40 4e-04
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 39 5e-04
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 38 0.001
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 37 0.002
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 37 0.002
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 37 0.002
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 36 0.005
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 36 0.005
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 36 0.005
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 34 0.015
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 34 0.020
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 33 0.034
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 32 0.060
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 31 0.14
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|... 31 0.14
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 30 0.24
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 29 0.42
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 29 0.56
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 29 0.74
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 28 0.97
SPAC10F6.06 |vip1||RNA-binding protein Vip1|Schizosaccharomyces ... 27 1.7
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 27 1.7
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch... 27 2.3
SPBC32H8.04c |||rRNA processing protein Fcf1 |Schizosaccharomyce... 27 3.0
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 3.0
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 3.0
SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces pombe... 27 3.0
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 26 5.2
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 25 6.9
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces... 25 9.1
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 25 9.1
SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces pom... 25 9.1
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S... 25 9.1
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 153 bits (370), Expect = 3e-38
Identities = 68/118 (57%), Positives = 90/118 (76%)
Frame = +1
Query: 124 ISSYRDQHFKGSRSEQEKLLKSSSTLYVGNLSFYTTEEQIYELFSRCGDIRRVVMGLDKY 303
+S Y + FK + + K S+ +YVGNLSFYTTEEQIY LFS+CG+IRR++MG+D++
Sbjct: 10 VSPYLIRRFKNDLRALDAV-KQSNCVYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRF 68
Query: 304 KKTPCGFCFLEYYTRLDAENCMRYINGTRLDDRIIRCDWDAGFIEGRQYGRGKTGGQV 477
KTPCGFCF+EY+ DA + ++YI+ T LD+RIIR D D G+ EGRQYGRG +GGQV
Sbjct: 69 TKTPCGFCFVEYFENQDALDSLKYISRTSLDERIIRADLDHGYEEGRQYGRGASGGQV 126
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 57.6 bits (133), Expect = 1e-09
Identities = 30/112 (26%), Positives = 58/112 (51%)
Frame = +1
Query: 139 DQHFKGSRSEQEKLLKSSSTLYVGNLSFYTTEEQIYELFSRCGDIRRVVMGLDKYKKTPC 318
D + R+++E + + ++YVGN+ + T E++ F+ CG + RV + DK+ P
Sbjct: 39 DNETEALRNDKESI--DAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPK 96
Query: 319 GFCFLEYYTRLDAENCMRYINGTRLDDRIIRCDWDAGFIEGRQYGRGKTGGQ 474
GF ++E+ N + +NG+ L +R ++ + G GRG+ G+
Sbjct: 97 GFAYIEFSEPSLVPNAL-LLNGSMLHERPLKVTPKRTNVPGMSRGRGRGRGR 147
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 53.6 bits (123), Expect = 2e-08
Identities = 30/77 (38%), Positives = 44/77 (57%)
Frame = +1
Query: 190 SSTLYVGNLSFYTTEEQIYELFSRCGDIRRVVMGLDKYKKTPCGFCFLEYYTRLDAENCM 369
S+TL V NLS T EE++ +LF R G I+RV + DK GF F+ YY R A
Sbjct: 201 SATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKAR 260
Query: 370 RYINGTRLDDRIIRCDW 420
++G ++ I+RC++
Sbjct: 261 DRLDGYGWNNLILRCEF 277
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 51.2 bits (117), Expect = 1e-07
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Frame = +1
Query: 172 EKLLKSSSTLYVGNLSFYTTEEQIYELFSRCGDIRRVVMGLDKYKKTPCGFCFLEYYTRL 351
++L + S T++VGNLSF TE+ + F CGDI+ + + D GF ++ +
Sbjct: 359 DQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDID 418
Query: 352 DAENCMRYINGTRLDDRIIRCDWDAGFI-EGRQYGRGKTGGQ 474
A+ C+ +NG + R R D+ G + GRG GG+
Sbjct: 419 SAKKCVE-MNGHFIAGRPCRLDFSTPRTGGGSRGGRGGFGGR 459
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 48.8 bits (111), Expect = 6e-07
Identities = 22/80 (27%), Positives = 41/80 (51%)
Frame = +1
Query: 181 LKSSSTLYVGNLSFYTTEEQIYELFSRCGDIRRVVMGLDKYKKTPCGFCFLEYYTRLDAE 360
+ S +YVGN+ + EEQ+ ++F + G ++ + +D P G+ F EY+ A
Sbjct: 1 MNPSCVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAA 60
Query: 361 NCMRYINGTRLDDRIIRCDW 420
+ +R +N R +R D+
Sbjct: 61 SAVRNLNNYDAGTRRLRVDF 80
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 46.4 bits (105), Expect = 3e-06
Identities = 24/91 (26%), Positives = 43/91 (47%)
Frame = +1
Query: 187 SSSTLYVGNLSFYTTEEQIYELFSRCGDIRRVVMGLDKYKKTPCGFCFLEYYTRLDAENC 366
+S++LYVG L TE ++ELF+ G + + + D + G+ ++ ++ D E
Sbjct: 78 TSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKA 137
Query: 367 MRYINGTRLDDRIIRCDWDAGFIEGRQYGRG 459
+ +N T + R R W R+ G G
Sbjct: 138 LDELNYTLIKGRPCRIMWSQRDPSLRKMGTG 168
Score = 36.7 bits (81), Expect = 0.003
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Frame = +1
Query: 145 HFKGSRSEQEKL--LKSSST-LYVGNLSFYTTEEQIYELFSRCGDIRRVVMGLDKYKKTP 315
H R Q K+ LK++ T +Y+ NL TE++ +LF + G+I + + D+ K P
Sbjct: 242 HHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDK-P 300
Query: 316 CGFCFLEYYTRLDAENCMRYIN 381
GF F+ Y A+ + +N
Sbjct: 301 RGFGFVNYANHECAQKAVDELN 322
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 46.0 bits (104), Expect = 5e-06
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 1/110 (0%)
Frame = +1
Query: 106 MNSAIEISSYRDQHF-KGSRSEQEKLLKSSSTLYVGNLSFYTTEEQIYELFSRCGDIRRV 282
MNS +I +Q K S + S+ +Y+GNL F E+ I +FS G+ +
Sbjct: 1 MNSIRQIERLNEQELDKPFSSSWHQDYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDI 60
Query: 283 VMGLDKYKKTPCGFCFLEYYTRLDAENCMRYINGTRLDDRIIRCDWDAGF 432
+ DK GF FL+Y + + + +L DR++R D A +
Sbjct: 61 NLVRDKETGKSKGFAFLKYEDQRSTVLAVDNMTNVKLLDRLVRVDHVASY 110
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 45.2 bits (102), Expect = 8e-06
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Frame = +1
Query: 127 SSYRDQHFKGSRSEQEKLLKSSS----TLYVGNLSFYTTEEQIYELFSRCGDIRRVVMGL 294
SS RD F +RS L +S T+ V NL+ T+E I E+F G I + M +
Sbjct: 74 SSSRDS-FSSNRSYSSSLSRSPEEPLRTILVENLTRNVTKEHIAEIFGIYGLIDHIFMPI 132
Query: 295 DKYKKTPCGFCFLEYYTRLDAENCMRYINGTRLD 396
K + G+C++EY A N + +N LD
Sbjct: 133 YKKSELNKGYCYIEYVYHDQAANAVDKMNNAELD 166
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 44.4 bits (100), Expect = 1e-05
Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
Frame = +1
Query: 100 DSMNSAIEISSYRDQHFKGSRSEQEKLLKSSSTLYVGNLSFYTTEEQIYELFSRCGDIRR 279
+++ +E S H +S ++VG LS T + +I LF G +R+
Sbjct: 13 NTVQDQVEASVDAAVHASAEQSNTPAQQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRK 72
Query: 280 VVMGLDKYKK----TPCGFCFLEYYTRLDAENCMRYINGTRLDDRII 408
V + + ++ P G F+ + + D + + +NG LDDR I
Sbjct: 73 VTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDKAIETLNGKTLDDREI 119
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 44.0 bits (99), Expect = 2e-05
Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Frame = +1
Query: 142 QHFKGSRSEQEK---LLKSSSTLYVGNLSFYTTEEQIYELFSRCGDIRRVVMGLDKYKKT 312
Q + + SEQE+ L+ + L++ NL++ E+ + LF G + +V M +DK
Sbjct: 303 QKAENNVSEQERNIQLISETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNN 362
Query: 313 PCGFCFLEYYTRLDAENCMRYINGTRLDDRII 408
P GF +++++ DA ++ R++
Sbjct: 363 PKGFAYIDFHDADDAVRAYLELDAKPFQGRLL 394
Score = 33.5 bits (73), Expect = 0.026
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Frame = +1
Query: 190 SSTLYVGNLSFYTTEEQIYELFSRCGDIRRVVMGLDKYKKTP-----CGFCFLEYYTRLD 354
++T+YV NL+F T +E+ ++F V+ K P GF F+E+ +
Sbjct: 618 TATIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKAS 677
Query: 355 AENCMRYINGTRLD 396
A M +NG LD
Sbjct: 678 AVAAMHAMNGFVLD 691
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 42.7 bits (96), Expect = 4e-05
Identities = 23/73 (31%), Positives = 38/73 (52%)
Frame = +1
Query: 190 SSTLYVGNLSFYTTEEQIYELFSRCGDIRRVVMGLDKYKKTPCGFCFLEYYTRLDAENCM 369
+S L++ NLSF T E++Y+LF R G +R++ +G + G F+ Y DA
Sbjct: 11 NSILFIKNLSFKITAEEMYDLFGRYGPVRQIRLGNTVQTR---GTAFVVYENVQDARRAC 67
Query: 370 RYINGTRLDDRII 408
++G DR +
Sbjct: 68 EKLSGYNFMDRYL 80
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 42.7 bits (96), Expect = 4e-05
Identities = 19/80 (23%), Positives = 44/80 (55%)
Frame = +1
Query: 181 LKSSSTLYVGNLSFYTTEEQIYELFSRCGDIRRVVMGLDKYKKTPCGFCFLEYYTRLDAE 360
+ + + ++VGN+ + +E+Q+ E+F++ G ++ + LD + G+ F E++
Sbjct: 3 MTAGNVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTA 62
Query: 361 NCMRYINGTRLDDRIIRCDW 420
+R +N + L R IR ++
Sbjct: 63 MAVRKLNNSELGPRKIRVEF 82
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 40.7 bits (91), Expect = 2e-04
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = +1
Query: 163 SEQEKLLKSSSTLYVGNLSFYTTEEQIYELFSRCGDIRRV-VMGLDKYKKTPCGFCFLEY 339
S Q + SS L+VGNL F TT+ + E F + G IRRV +M + K GF F+++
Sbjct: 218 SIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCK-GFGFVDF 276
Query: 340 YTRLDAENCMR 372
D + CM+
Sbjct: 277 ---PDIDTCMK 284
Score = 31.5 bits (68), Expect = 0.10
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1
Query: 151 KGSRSEQEKLLKSSSTLYVGNLSFYTTEEQIYELFSR 261
K QE+ +S ++VGNLSF+TT+E + + F R
Sbjct: 91 KEEGESQEESKRSPWGIWVGNLSFHTTKEILTDFFVR 127
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 40.3 bits (90), Expect = 2e-04
Identities = 20/73 (27%), Positives = 38/73 (52%)
Frame = +1
Query: 193 STLYVGNLSFYTTEEQIYELFSRCGDIRRVVMGLDKYKKTPCGFCFLEYYTRLDAENCMR 372
+T+Y+GNL T+ ++EL + G + + + D+ + + GF F E+ D E +
Sbjct: 11 ATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQ 70
Query: 373 YINGTRLDDRIIR 411
+N +L + IR
Sbjct: 71 ILNQVKLFGKPIR 83
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 39.9 bits (89), Expect = 3e-04
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = +1
Query: 199 LYVGNLSFYTTEEQIYEL-FSRCGDIRRVVMGLDKYKKTPCGFCFLEYYTRLDAENCMRY 375
L + NL + + Q E FS+ G +R + + K CGF F+ R AE M
Sbjct: 109 LIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPT-KGGGRMCGFAFVWMKDRKAAEEAMNS 167
Query: 376 INGTRLDDRIIRCDW 420
+NGT +D R I DW
Sbjct: 168 LNGTEIDGRPIAVDW 182
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 39.5 bits (88), Expect = 4e-04
Identities = 22/71 (30%), Positives = 36/71 (50%)
Frame = +1
Query: 199 LYVGNLSFYTTEEQIYELFSRCGDIRRVVMGLDKYKKTPCGFCFLEYYTRLDAENCMRYI 378
L V N+ F T+E + +F GDI V + D ++ GF +++Y + A N + +
Sbjct: 342 LCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSK-GFGYIQYRNPISARNALEKM 400
Query: 379 NGTRLDDRIIR 411
NG L R +R
Sbjct: 401 NGFDLAGRNMR 411
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 39.5 bits (88), Expect = 4e-04
Identities = 25/76 (32%), Positives = 39/76 (51%)
Frame = +1
Query: 184 KSSSTLYVGNLSFYTTEEQIYELFSRCGDIRRVVMGLDKYKKTPCGFCFLEYYTRLDAEN 363
+ +T++VGNL+ TE +Y F G+I V + K K + F+E+ DA+
Sbjct: 3 RRKATVHVGNLAPSVTESLLYNAFIPFGEIISVALH-RKEKAVDRSYAFVEFDEPEDAKE 61
Query: 364 CMRYINGTRLDDRIIR 411
M +N + L DR IR
Sbjct: 62 AMENMNYSILCDRCIR 77
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 39.1 bits (87), Expect = 5e-04
Identities = 25/78 (32%), Positives = 41/78 (52%)
Frame = +1
Query: 187 SSSTLYVGNLSFYTTEEQIYELFSRCGDIRRVVMGLDKYKKTPCGFCFLEYYTRLDAENC 366
++ST++VG LS + +EE++ LF G+I V + K CG F+++ R AE
Sbjct: 301 ANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGK----GCG--FVQFVNRQSAEIA 354
Query: 367 MRYINGTRLDDRIIRCDW 420
+ + G L + IR W
Sbjct: 355 INQLQGYPLGNSRIRLSW 372
Score = 37.1 bits (82), Expect = 0.002
Identities = 18/73 (24%), Positives = 40/73 (54%)
Frame = +1
Query: 163 SEQEKLLKSSSTLYVGNLSFYTTEEQIYELFSRCGDIRRVVMGLDKYKKTPCGFCFLEYY 342
S +++ + +TL++G L + TE I ++++ G +V + ++Y G+CF+E+
Sbjct: 83 SSRDENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFA 142
Query: 343 TRLDAENCMRYIN 381
+ +A + M N
Sbjct: 143 SPHEASSAMSMNN 155
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 38.3 bits (85), Expect = 0.001
Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Frame = +1
Query: 91 RSYDSMNSAIEISS--YRDQHFKGSRSEQEKLLKSSSTLYVGNLSFYTTEEQIYELFSRC 264
R S SA+ ++ + D+H + + ++VGNL+F EE ++ F C
Sbjct: 234 RDSSSARSALSLNGTMFMDRHLRVDSVSHPMPQDTKRCVFVGNLAFEAEEEPLWRYFGDC 293
Query: 265 GDIRRVVMGLDKYKKTPCGFCFLEYYTRLDAENCM 369
G I V + D GF ++++ + + +
Sbjct: 294 GSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKAL 328
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 37.1 bits (82), Expect = 0.002
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = +1
Query: 178 LLKSSSTLYVGNLSFYTTEEQIYELFSRCGDIRRVVMGLDKYKKTPCGFCFLEYYTRLDA 357
+L S +Y+ NL E+Q+ EL GD+ + + + GFCF E+ DA
Sbjct: 305 VLDSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDA 364
Query: 358 ENCMRYING 384
E + ++G
Sbjct: 365 EVAISGLDG 373
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 37.1 bits (82), Expect = 0.002
Identities = 19/77 (24%), Positives = 40/77 (51%)
Frame = +1
Query: 190 SSTLYVGNLSFYTTEEQIYELFSRCGDIRRVVMGLDKYKKTPCGFCFLEYYTRLDAENCM 369
S +YVGNL + T++ + +LF+ G + R + + ++ GF +++ DA + +
Sbjct: 279 SDCIYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSK-GFGVVQFENENDAASSI 337
Query: 370 RYINGTRLDDRIIRCDW 420
+NG R R ++ +
Sbjct: 338 EKLNGYRYGGRPLQLSY 354
Score = 30.3 bits (65), Expect = 0.24
Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 7/98 (7%)
Frame = +1
Query: 136 RDQHFKGSRSEQE-------KLLKSSSTLYVGNLSFYTTEEQIYELFSRCGDIRRVVMGL 294
R HF G +E++ K + +YVGNLS+ ++ E + G++ + L
Sbjct: 40 RGLHFDGEHTERDPHLGNGQKYTQQERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEI-L 98
Query: 295 DKYKKTPCGFCFLEYYTRLDAENCMRYINGTRLDDRII 408
+ G +EY T +A ++ ++ + R++
Sbjct: 99 NLPNGLSKGCAIIEYSTAEEARTAIKTLSNQKFMGRLV 136
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 37.1 bits (82), Expect = 0.002
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Frame = +1
Query: 151 KGSRSEQEKLLKSSSTLYVGNLSFYTTEEQIYELFSRCGDIRRV-VMGLDKYK----KTP 315
K S + K ++YVGNL ++ELF G+ + ++ K K K+P
Sbjct: 6 KLSEKNKRSTKKCEISIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSP 65
Query: 316 CGFCFLEYYTRLDAENCMRYINGTRLDDRIIRCDW 420
F F+ + + A+N + +NG+ ++ ++
Sbjct: 66 TLFAFITFENKCSADNAIASLNGSSFQGNTLKVEY 100
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 35.9 bits (79), Expect = 0.005
Identities = 24/100 (24%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Frame = +1
Query: 118 IEISSYRDQHFKGSRSEQEKLLKSSSTLYVGNLSFYTTEEQIYELFSRCGDIRRVVMGLD 297
+++ ++ K SE + L K LYVG L E+Q+ FS+ G + R+ M +
Sbjct: 80 MDLGEDAEKTIKKKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRN 139
Query: 298 KYKKTPCGFCFLEYYTRLDAENCM-RYINGTRLDDRIIRC 414
+ + + F+E+ + LD N + ++ L ++++C
Sbjct: 140 RKTGSSKHYAFIEFES-LDVANVVAETMHNYLLYGKLLQC 178
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 35.9 bits (79), Expect = 0.005
Identities = 20/70 (28%), Positives = 38/70 (54%)
Frame = +1
Query: 229 TEEQIYELFSRCGDIRRVVMGLDKYKKTPCGFCFLEYYTRLDAENCMRYINGTRLDDRII 408
TEEQ+ +LF+ G ++ + + LD+ G+ +EY T A+ + N + LD+++
Sbjct: 22 TEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEKNLSLLDEKL- 80
Query: 409 RCDWDAGFIE 438
+ D F+E
Sbjct: 81 --EVDFAFLE 88
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 35.9 bits (79), Expect = 0.005
Identities = 23/71 (32%), Positives = 35/71 (49%)
Frame = +1
Query: 193 STLYVGNLSFYTTEEQIYELFSRCGDIRRVVMGLDKYKKTPCGFCFLEYYTRLDAENCMR 372
+T+YVGNLS E+++ FS+ RR+ + K CF+E+ A M
Sbjct: 602 NTIYVGNLSNPDQEKKLRLAFSKEKGYRRLCFKI----KGNSPMCFVEFEEVCHAAKAME 657
Query: 373 YINGTRLDDRI 405
+ G LDD+I
Sbjct: 658 KMQGAALDDKI 668
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 34.3 bits (75), Expect = 0.015
Identities = 22/70 (31%), Positives = 32/70 (45%)
Frame = +1
Query: 160 RSEQEKLLKSSSTLYVGNLSFYTTEEQIYELFSRCGDIRRVVMGLDKYKKTPCGFCFLEY 339
R EQEK K ++VG + TEE+ F++ G + + +DK P GF F+ Y
Sbjct: 240 REEQEKTAK----MFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTY 295
Query: 340 YTRLDAENCM 369
E M
Sbjct: 296 ENESAVEATM 305
Score = 29.5 bits (63), Expect = 0.42
Identities = 16/82 (19%), Positives = 38/82 (46%)
Frame = +1
Query: 94 SYDSMNSAIEISSYRDQHFKGSRSEQEKLLKSSSTLYVGNLSFYTTEEQIYELFSRCGDI 273
+Y+ SA+ S + + + + E + +++G L++ TT++ + + F + G++
Sbjct: 131 NYNENQSALTGSGAMESN-EDNAEETSPFNREDGKMFIGGLNWETTDDSLRDYFEQFGEV 189
Query: 274 RRVVMGLDKYKKTPCGFCFLEY 339
+ D GF FL +
Sbjct: 190 LDCTVMRDSTTGRSRGFGFLTF 211
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 33.9 bits (74), Expect = 0.020
Identities = 22/86 (25%), Positives = 36/86 (41%)
Frame = +1
Query: 193 STLYVGNLSFYTTEEQIYELFSRCGDIRRVVMGLDKYKKTPCGFCFLEYYTRLDAENCMR 372
+ L+V L+ T +E + +FSR G I + DK + F+E+ + E
Sbjct: 244 NVLFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYF 303
Query: 373 YINGTRLDDRIIRCDWDAGFIEGRQY 450
+ +DD I D+ RQY
Sbjct: 304 KMQNVLIDDSRIHVDFSQSVARYRQY 329
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 33.1 bits (72), Expect = 0.034
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = +1
Query: 88 KRSYDSMNSAIEISSYRDQHFKGSRSEQEKLLKSSSTLYVGNLSFYTTEEQIYELFSRCG 267
KR Y+S ++ S R++ K SE + +Y+ L T ++I E+F +CG
Sbjct: 75 KRLYESTSAEGYPSGSRNKKSKSENSEASPAPVINKAVYIQGLPLDVTVDEIEEVFKKCG 134
Query: 268 DIRR 279
I +
Sbjct: 135 VIAK 138
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 32.3 bits (70), Expect = 0.060
Identities = 20/96 (20%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
Frame = +1
Query: 124 ISSYRDQHFKGSRSEQEKLLKSSSTLYVGNLSFYTTEEQIYELFSRCGDIRRVVMGLDKY 303
++ +R + + + +S L+V NL + ELFS+ GD++ G+D
Sbjct: 172 VTGFRSSSLNSNSDDIDIFSHASRYLFVTNLPRIVPYATLLELFSKLGDVK----GIDTS 227
Query: 304 KKTPCGFCFLEYYTRLDAENCMRYINGTR-LDDRII 408
+ G C + ++ A + + R +DR++
Sbjct: 228 SLSTDGICIVAFFDIRQAIQAAKSLRSQRFFNDRLL 263
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 31.1 bits (67), Expect = 0.14
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +1
Query: 190 SSTLYVGNLSFYTTEEQIYELFSRCGDIRRV 282
SST+YVGN+ ++E+I + FS+ G + +
Sbjct: 16 SSTIYVGNIDSRLSDEEIIKHFSKYGQVESI 46
>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 329
Score = 31.1 bits (67), Expect = 0.14
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Frame = -1
Query: 550 LLFSVQLSFHSHHGLHHNQFYIHHGPVHQSFHVHIVCPQ*IRHPSHTL-*FCRQA*FHLY 374
LLFS L + H LHH Y P+H+ H IV H H L + + +H++
Sbjct: 159 LLFSDFLIYWIHRALHHRWLY---APLHKLHHKWIVPTPYSSHAFHYLDGYSQSLPYHMF 215
Query: 373 TSYNFQHLIVYSIL-GSRNH 317
+ + VY +L GS N+
Sbjct: 216 PFFFPLNKYVYLLLFGSVNY 235
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 30.3 bits (65), Expect = 0.24
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Frame = +1
Query: 184 KSSSTLYV-GNLSFYTTEEQIYELFSRCGDIRRVVMGLDKYKKTPCGFCFLEYYTRLDAE 360
+S TLYV G E YE F G + R + + + +T F F+EY DAE
Sbjct: 4 RSLRTLYVTGFRDGMRARELAYE-FEPFGPLIRCDIPIPR-TRTSRPFAFVEYEDSRDAE 61
Query: 361 NCMRYINGTRLD--DRIIRCDW 420
+ ++G RL+ ++R +W
Sbjct: 62 DAYYEVHGRRLERGGGVLRVEW 83
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 29.5 bits (63), Expect = 0.42
Identities = 20/72 (27%), Positives = 35/72 (48%)
Frame = +1
Query: 196 TLYVGNLSFYTTEEQIYELFSRCGDIRRVVMGLDKYKKTPCGFCFLEYYTRLDAENCMRY 375
T +VGNLSF TE + + F + + + +D + GF ++E+ T D +
Sbjct: 95 TAHVGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEFET-ADTLSAALA 151
Query: 376 INGTRLDDRIIR 411
++G L R +R
Sbjct: 152 LSGEDLMGRPVR 163
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 29.1 bits (62), Expect = 0.56
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +1
Query: 199 LYVGNLSFYTTEEQIYELFSRCGDIRRVVMGLDKYKKTPCGFCFLEYYTR 348
++V N+S T EQ+ F G++ + + L+ Y T G C + + R
Sbjct: 96 VFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKR 145
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 28.7 bits (61), Expect = 0.74
Identities = 21/71 (29%), Positives = 33/71 (46%)
Frame = +1
Query: 193 STLYVGNLSFYTTEEQIYELFSRCGDIRRVVMGLDKYKKTPCGFCFLEYYTRLDAENCMR 372
+T+YVGNL T+EE++ LFS +R+ K CF+E+ A ++
Sbjct: 426 NTIYVGNLPPSTSEEELKVLFSTQVGYKRLCF----RTKGNGPMCFVEFENIPYAMEALK 481
Query: 373 YINGTRLDDRI 405
+ G L I
Sbjct: 482 NLQGVCLSSSI 492
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 28.3 bits (60), Expect = 0.97
Identities = 15/76 (19%), Positives = 33/76 (43%)
Frame = +1
Query: 193 STLYVGNLSFYTTEEQIYELFSRCGDIRRVVMGLDKYKKTPCGFCFLEYYTRLDAENCMR 372
+ + V N+ F ++ + + F + G R G F +Y +A+ ++
Sbjct: 202 TAIVVKNIPFSLEKDTLLDHFKQLGIPRPYAFNYHYDNGIFRGLAFANFYRPEEAQVVVQ 261
Query: 373 YINGTRLDDRIIRCDW 420
+NG ++ R +R +W
Sbjct: 262 TLNGYEINGRRLRVEW 277
>SPAC10F6.06 |vip1||RNA-binding protein Vip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 257
Score = 27.5 bits (58), Expect = 1.7
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 190 SSTLYVGNLSFYTTEEQIYELFSRCGDIRRV 282
S+ + V N+S TE+QI + FS CG + +
Sbjct: 2 SNQVIVTNISPEVTEKQISDFFSFCGKVSNI 32
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 27.5 bits (58), Expect = 1.7
Identities = 13/76 (17%), Positives = 34/76 (44%)
Frame = +1
Query: 193 STLYVGNLSFYTTEEQIYELFSRCGDIRRVVMGLDKYKKTPCGFCFLEYYTRLDAENCMR 372
+ + + N+ F +E ++++F+ R G F +++ +A+ ++
Sbjct: 232 TAIVIKNIPFSLKKEVLFKVFTALDIPRPYAFNYHFDNGVFRGLAFANFHSPEEAKTVVQ 291
Query: 373 YINGTRLDDRIIRCDW 420
+NG + R +R +W
Sbjct: 292 VLNGYEITGRRLRVEW 307
>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
Exg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -3
Query: 311 VFLYLSKPITTLLISPHLENNS*ICSSVV*KDKLPTYSVDELFNN 177
VFL + P+ L+I PH +++ I + + L +DE+FN+
Sbjct: 48 VFLSIILPLIFLVIIPHAQSDRKIKDTNMETTNLGVNIIDEIFNS 92
>SPBC32H8.04c |||rRNA processing protein Fcf1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 192
Score = 26.6 bits (56), Expect = 3.0
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -2
Query: 93 PFHIAIEQNFKSICLKSKL 37
P+H+ I+ NF + CL+ K+
Sbjct: 64 PYHVIIDTNFINFCLQQKI 82
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 26.6 bits (56), Expect = 3.0
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 199 LYVGNLSFYTTEEQIYELFSRCG-DIRRVVMGLDKYKKTPCGFCFLEY 339
L + NL +EE +++ S+ D++RV M K+ CG+ LE+
Sbjct: 211 LILRNLDRSLSEETLWKGLSKLEIDVQRVFMIRYKFNDAFCGYAILEF 258
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 26.6 bits (56), Expect = 3.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 199 LYVGNLSFYTTEEQIYELFSRCGDIRRVVM 288
LYV NL T+ I+ LFS G+++ + M
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNVKDIWM 31
>SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 229
Score = 26.6 bits (56), Expect = 3.0
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +1
Query: 64 KVLFNCNMKRSYDSMNSAIE-ISSYRDQHFKGSRSEQEKLLKSSSTLYVGNLSF 222
K L N++++ +++ E + RD+ SR EQEKLL+ + + G S+
Sbjct: 128 KKLRESNIEKARKAIDDFYENFNDKRDKVIAKSRKEQEKLLEENESKSTGTTSW 181
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 25.8 bits (54), Expect = 5.2
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +1
Query: 172 EKLLKSSSTLY-VGNLSFYTTEEQIYELFSRCGDIRRVVMGLDKYKKTPCGFC 327
EK LK S + +G+ FY T + F+R +RR + K C FC
Sbjct: 9 EKPLKKRSRAHRLGDPRFYCTYPDCPKSFTRKEHLRRHERTHENVKAFSCSFC 61
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 25.4 bits (53), Expect = 6.9
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Frame = +1
Query: 199 LYVGNLSFYTTEEQIYELFSRCGDIRRVVMGLDKYKKTPCG----FCFLEYYTRLDA-EN 363
+YVG LS + FSR G + + + K TP G F +L + T D +
Sbjct: 7 IYVGGLSSSIESSDLESRFSRFGSVSNLEI---INKSTPVGTIQRFAYLNFRTDEDKWQK 63
Query: 364 CMRYINGTRLDDRIIRCD 417
C Y++ +R +
Sbjct: 64 CKSYLSNATFKGSKLRIE 81
>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 735
Score = 25.0 bits (52), Expect = 9.1
Identities = 8/22 (36%), Positives = 17/22 (77%)
Frame = +3
Query: 153 GFKKRTRKVIKKFIYTICWQFV 218
G+++ TR+++ +++YTI FV
Sbjct: 623 GYEEETRRLVYRWLYTITKSFV 644
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = -1
Query: 523 HSHHGLHHNQFYIHHGPVHQS 461
H HH HN H GP +Q+
Sbjct: 27 HLHHVPQHNGSLAHEGPTNQT 47
>SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 25.0 bits (52), Expect = 9.1
Identities = 7/25 (28%), Positives = 14/25 (56%)
Frame = -1
Query: 541 SVQLSFHSHHGLHHNQFYIHHGPVH 467
++ H +G +N+F ++H P H
Sbjct: 227 TLSAGLHFRYGASYNEFCVNHSPEH 251
>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
Raf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 638
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = -1
Query: 385 FHLYTSYNFQHLIVYSILGSRNHKVFSYICLSPSQLFLY 269
FH T + + + +G + + S +C S LFLY
Sbjct: 277 FHSETIQSLESHYKLNQVGEKEYSTISDLCFSKGNLFLY 315
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,480,151
Number of Sequences: 5004
Number of extensions: 50507
Number of successful extensions: 187
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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