Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_K19
         (465 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    27   1.1  
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual        27   1.4  
SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   2.5  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   4.3  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    25   5.7  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    25   5.7  
SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomy...    25   7.5  
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S...    24   9.9  

>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +1

Query: 46  QGVSKESMAGRDQRLRAYAAASRSDERKRRSRQDVTDSPGRK 171
           Q   +E MA R+QRLR        +ERKRR + D  +   R+
Sbjct: 680 QEADREKMA-REQRLREEEEKRILEERKRREKLDKEEEERRR 720


>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 59  KKAWLDVTNDYGHTPLHLAVMSGN 130
           ++A L+ ++ YG TPLH A+  G+
Sbjct: 163 QRAPLNTSDSYGFTPLHFALAEGH 186


>SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 210

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 86  DYGHTPLHLAVMSGNAVVAKMSLI 157
           DY  TP+ LA+ SG   V K +++
Sbjct: 86  DYSQTPIRLAIRSGKKSVHKSAVV 109


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 323 NILWHIKFCITINIHHPSSIHHLQIE**PYYS 228
           NI    K+CI  N+  PS++ H + E   YYS
Sbjct: 440 NICTFAKWCINNNLDEPSNLKHFR-EMLDYYS 470


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +2

Query: 5   ASVHGCEKSVSTLIRVCPKKAWLDVTNDYGHTPLHLAVMSGNAVVAKMSL 154
           AS HG E   + L+R     A +  T++   TPLH +++ GN    K+ L
Sbjct: 141 ASYHGNEPITNCLLRW---GADVLATDEDKMTPLHWSIVGGNLKCMKLIL 187


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 305 KFCITINIHHPSSIHHLQI 249
           +FCI+ ++ HP+ IH L +
Sbjct: 405 EFCISSSLRHPNVIHTLDL 423


>SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 764

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 112 EMQRRMPVIVGHVQPCFLWTHPD 44
           E + R+  IV HV    LW +PD
Sbjct: 712 EFKERIDAIVKHVPKDHLWLNPD 734


>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 548

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 240 TILLFIAVNIFEPFGPPSD 184
           +I+   AVN+F P  PPS+
Sbjct: 173 SIVHMFAVNVFRPLPPPSN 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,584,461
Number of Sequences: 5004
Number of extensions: 29206
Number of successful extensions: 86
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)