Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_K17
(627 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr... 30 0.24
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo... 29 0.42
SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces pombe... 27 2.9
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 26 3.9
SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr 3|... 26 3.9
SPCC18B5.04 |rsm18||mitochondrial ribosomal protein subunit S18|... 25 6.8
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 25 6.8
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 25 6.8
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 25 6.8
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi... 25 9.0
>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 541
Score = 30.3 bits (65), Expect = 0.24
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 353 TFIRYSTKFMVKRRLRNTPWPSSRKEPRTPRSMIYEA 463
T + Y +++ + + RN W + + R PRS IY+A
Sbjct: 283 TILDYKARYL-RNKTRNMKWHTIHERQRNPRSAIYQA 318
>SPAC1039.07c |||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 29.5 bits (63), Expect = 0.42
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +1
Query: 52 HVADNIPIKPMDYLNKANYTAVIERGHGAPELVVR 156
HV++N + P+ + N+AN + + G AP+++VR
Sbjct: 4 HVSNNSILDPVTFWNQANKSLIRYGGDFAPKIIVR 38
>SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 26.6 bits (56), Expect = 2.9
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 606 DAGYARPSEEIGQVFDAFTGVDGFFID 526
D YA+ SE+ QVF + G DG ID
Sbjct: 45 DPKYAKLSEQDVQVFKSIIGKDGSLID 71
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 26.2 bits (55), Expect = 3.9
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +1
Query: 97 KANYTAVIERGHGAPELVVRMCVTPNVALAKCRAMSVFAFSRDIRPIMDCVQEPTED 267
K YT ++ER E V N AK R + ++++ RP + V+ T+D
Sbjct: 97 KVEYTHIVERYKNKLENGVDQIHHSNNEKAKIRFSKIEKYTKETRPTVSEVRVSTKD 153
>SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 347
Score = 26.2 bits (55), Expect = 3.9
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +1
Query: 22 KVLGLSEKIYHVADNIPIKPMDYLNKANYTA 114
K+ SEK+ V + KP+ L K Y A
Sbjct: 59 KIYPNSEKVVQVGQGLSFKPLSLLGKCGYIA 89
>SPCC18B5.04 |rsm18||mitochondrial ribosomal protein subunit
S18|Schizosaccharomyces pombe|chr 3|||Manual
Length = 166
Score = 25.4 bits (53), Expect = 6.8
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +1
Query: 253 EPTEDDCFKSVQDN 294
EP +DCFK+V +N
Sbjct: 92 EPVREDCFKTVNEN 105
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 25.4 bits (53), Expect = 6.8
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 6/49 (12%)
Frame = -1
Query: 153 DDELRSAVSSFND---GSVVS---LVQVVHWFYWDVIGDVIYLLRQAQN 25
++E RSAV++ + G +S + V ++Y+DV V YLL++A +
Sbjct: 31 EEEFRSAVATVRETLLGVPISEKEIADTVWYYYFDVEKSVNYLLQKASS 79
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 25.4 bits (53), Expect = 6.8
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -1
Query: 501 TAERPEGVMAGSFAS*IIDLGVRGSFLDDGHGVFRSLLFTINFVE 367
T+ RP + G + DLG++ + HG+ +L +N+VE
Sbjct: 948 TSNRPNSTLFGKGR--VKDLGIQSVLIWLSHGLLTLILHELNWVE 990
>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 25.4 bits (53), Expect = 6.8
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = -1
Query: 165 DAHSDDELRSAVSSFNDGSVVSLVQVVHWF--YWDVIG 58
D SDD + SA+++ DG + H F YW + G
Sbjct: 88 DVTSDDSINSALTTVTDGMLNYYQSTSHTFTAYWWMTG 125
>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 893
Score = 25.0 bits (52), Expect = 9.0
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 159 HSDDELRSAVSSFNDGSVVSLVQVV 85
HS D RS + DGSVV L V+
Sbjct: 365 HSQDNNRSNIELLKDGSVVRLRHVM 389
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,606,726
Number of Sequences: 5004
Number of extensions: 52981
Number of successful extensions: 181
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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