Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_K17
         (627 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003130-9|AAP68939.1|  307|Caenorhabditis elegans Hypothetical ...    33   0.22 
Z68134-4|CAA92224.1|  567|Caenorhabditis elegans Hypothetical pr...    29   2.1  

>AF003130-9|AAP68939.1|  307|Caenorhabditis elegans Hypothetical
           protein F55A12.2c protein.
          Length = 307

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 443 RSMIYEAKDPAITPSGRSAVFTHLSTTLSIKKPSTPVNASKTWPISSE 586
           R ++  A+D +  PS RS ++ +LS+  S  +       S TWP   E
Sbjct: 32  RGLVAAARDASTDPSNRSTLWQNLSSMSSADQAHLMSRLSSTWPFRDE 79


>Z68134-4|CAA92224.1|  567|Caenorhabditis elegans Hypothetical
           protein T27A8.5 protein.
          Length = 567

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +2

Query: 509 HLSTTLSIKKPSTPVNASKTWPIS 580
           HLST LSI     P N +K WP+S
Sbjct: 101 HLSTLLSIDGVHIPGNNNKLWPVS 124


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,561,144
Number of Sequences: 27780
Number of extensions: 302993
Number of successful extensions: 836
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)