Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_K16
         (413 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    25   6.1  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    25   6.1  
SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity f...    25   6.1  
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||...    24   8.1  

>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
 Frame = +3

Query: 84  CGTNYCKDHPCTAPIAPRSCRSPSLYRANHSGK-CAC 191
           CGT      PC    +   C S + Y  N  G+ C C
Sbjct: 89  CGTTRTHSIPCNLRKSVDECGSENDYNHNFEGRFCIC 125


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1142

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = +3

Query: 12   IKMKAIITLLLLACVMTIVYGDLVCGTNYCKDHPCTAPI--APRSCRSPSLYR 164
            ++ + I  +LLL   MT+V   LV G   C     TA      R C   S YR
Sbjct: 942  MQARIIGIMLLLLMAMTVVPFQLVYGVALCTQTVTTAKALHLARFCTKSSHYR 994


>SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity
           factor complex subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +3

Query: 111 PCTAPIAPRSCRSPSLYR--ANHSGKCACCPACVTL 212
           PC   I PRSC   S+ +   +++ K +  P CV L
Sbjct: 107 PCVCLIGPRSCGKTSVLKILESYALKQSRHPICVNL 142


>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 192 CPACVTLLSENAGC 233
           CP C T + +N GC
Sbjct: 291 CPKCSTTIEKNGGC 304


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,678,189
Number of Sequences: 5004
Number of extensions: 32961
Number of successful extensions: 82
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)