Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_K16
         (413 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0078 + 19507705-19508169                                         28   2.6  
01_06_1602 - 38559661-38559936,38560008-38560137,38562550-385627...    28   3.4  
03_04_0098 - 17275045-17275665                                         27   4.5  
12_02_0986 + 25055674-25056571,25057741-25057782,25058651-25059888     27   5.9  
07_03_1219 + 24960043-24960133,24960304-24960336,24962258-249624...    27   7.8  
05_04_0339 + 20397591-20397627,20398494-20398526,20399210-203994...    27   7.8  

>02_04_0078 + 19507705-19508169
          Length = 154

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +3

Query: 111 PCTAPIAPRSCRSPSLYRANHSGKCACCPACVTLLSENAGCKTYSKGNWGKSCRC 275
           P T P +P S   P+   ++ + +     A V   S  A C+    G  G +CRC
Sbjct: 57  PATHPSSPSSSSCPAFLPSSTAAEAGVVVAAVAKASRCASCRK-RVGLTGFACRC 110


>01_06_1602 -
           38559661-38559936,38560008-38560137,38562550-38562778,
           38563627-38563659,38563746-38563896
          Length = 272

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +1

Query: 277 CREPLKWLNGVCTKVTPRRLTEI*IYS*P 363
           C    KW +G C K+TP R   I  Y  P
Sbjct: 235 CDNCEKWYHGKCVKITPARAEHIKQYKCP 263


>03_04_0098 - 17275045-17275665
          Length = 206

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = -1

Query: 155 RGRTATPWGDRRSAGMIFTIVCTAYQITVNYGHDASEQQQGYNS 24
           R   A PWGDR S G   +  CT  +   N GH  +    GY+S
Sbjct: 39  RRGAAAPWGDRCSHGWTSSPACTLSRHR-NLGHSRA-GAPGYSS 80


>12_02_0986 + 25055674-25056571,25057741-25057782,25058651-25059888
          Length = 725

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
 Frame = +3

Query: 168 NHSGKCACCPACVTLLSENAGCKTYS--KGNWGKSCRCL 278
           N S   A     V L + NA C       G WG  CRCL
Sbjct: 244 NCSNHSAAAADLVGLCAANATCHDVRTPSGAWGHQCRCL 282


>07_03_1219 +
           24960043-24960133,24960304-24960336,24962258-24962486,
           24963183-24963309,24963530-24963869,24964806-24965095
          Length = 369

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 292 KWLNGVCTKVTPRRLTEI*IYS*P 363
           KW +G C K+TP +   I  Y  P
Sbjct: 233 KWFHGKCVKITPAKAEHIKQYKCP 256


>05_04_0339 +
           20397591-20397627,20398494-20398526,20399210-20399438,
           20402055-20402184,20402251-20402532
          Length = 236

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 277 CREPLKWLNGVCTKVTPRRLTEI*IYS*P 363
           C    +W +G C K+TP R   I  Y  P
Sbjct: 199 CDSCERWYHGKCVKITPARAEHIKHYKCP 227


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,950,967
Number of Sequences: 37544
Number of extensions: 225033
Number of successful extensions: 625
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)