Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_K16
         (413 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35604-2|CAA84677.1|  809|Caenorhabditis elegans Hypothetical pr...    27   0.34 
U19744-1|AAA85704.1|  809|Caenorhabditis elegans integrin beta p...    27   0.34 
Z68296-6|CAE17754.1|  195|Caenorhabditis elegans Hypothetical pr...    29   1.3  
U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily ass...    29   1.8  
AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein.     29   1.8  
AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein.     29   1.8  
Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical pr...    28   2.3  
Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical pr...    28   2.3  
Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical pr...    28   2.3  
AL713992-2|CAD29326.2|  317|Caenorhabditis elegans Hypothetical ...    28   3.1  
Z70038-7|CAA93886.2|  373|Caenorhabditis elegans Hypothetical pr...    27   7.1  
Z30662-4|CAA83139.3|  376|Caenorhabditis elegans Hypothetical pr...    26   9.4  
U58756-4|AAC48082.1|  291|Caenorhabditis elegans Hypothetical pr...    26   9.4  
U23452-5|AAK31546.1|  304|Caenorhabditis elegans Hypothetical pr...    26   9.4  
AF000262-10|AAN60530.1|  350|Caenorhabditis elegans Twik family ...    26   9.4  

>Z35604-2|CAA84677.1|  809|Caenorhabditis elegans Hypothetical
           protein ZK1058.2 protein.
          Length = 809

 Score = 26.6 bits (56), Expect(2) = 0.34
 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
 Frame = +3

Query: 69  YGDLVCGTNYCKD----HPCTAPIAPRSCRSPSLYRANHSGKCAC 191
           +G+  CG   C        C  PI+  SC S +    N  G+C C
Sbjct: 581 HGECNCGKCICAPGWTGRACECPISTDSCLSANGKICNGKGECIC 625



 Score = 23.0 bits (47), Expect(2) = 0.34
 Identities = 10/22 (45%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
 Frame = +3

Query: 171 HSG-KCACCPACVTLLSENAGC 233
           +SG KC  CP C T   E   C
Sbjct: 639 YSGAKCEICPTCPTKCVEYKNC 660


>U19744-1|AAA85704.1|  809|Caenorhabditis elegans integrin beta
           pat-3 protein.
          Length = 809

 Score = 26.6 bits (56), Expect(2) = 0.34
 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
 Frame = +3

Query: 69  YGDLVCGTNYCKD----HPCTAPIAPRSCRSPSLYRANHSGKCAC 191
           +G+  CG   C        C  PI+  SC S +    N  G+C C
Sbjct: 581 HGECNCGKCICAPGWTGRACECPISTDSCLSANGKICNGKGECIC 625



 Score = 23.0 bits (47), Expect(2) = 0.34
 Identities = 10/22 (45%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
 Frame = +3

Query: 171 HSG-KCACCPACVTLLSENAGC 233
           +SG KC  CP C T   E   C
Sbjct: 639 YSGAKCEICPTCPTKCVEYKNC 660


>Z68296-6|CAE17754.1|  195|Caenorhabditis elegans Hypothetical
           protein C46C2.6a protein.
          Length = 195

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +3

Query: 117 TAPIAPRSCRSPSLYRANHSGKCACCPACVTLLSENAGC-KTYSKGNWGKSC 269
           TAP   ++C S   +   HSG+CA   AC+   S    C K +S     K C
Sbjct: 52  TAPFCYQTCPSDYDFIRQHSGRCADGTACIPDSSFGEPCIKLFSYQMTKKFC 103


>U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 152, isoform a protein.
          Length = 2560

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 4/69 (5%)
 Frame = +3

Query: 87  GTNYCKDHPCTAPIAPRSCRSPSLYRANH-SGKCACCPACVTLLSENAGCKTYSKGNW-- 257
           GT+  K+HP  + +    C S    R     GKC C P       + A C     GN   
Sbjct: 302 GTSGAKEHPLASVLV---CESNCNQRGECVHGKCHCAPGFTGRTCDEAVCPVVCSGNGVF 358

Query: 258 -GKSCRCLS 281
            G  C C S
Sbjct: 359 SGGICVCKS 367


>AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein.
          Length = 2502

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 4/69 (5%)
 Frame = +3

Query: 87  GTNYCKDHPCTAPIAPRSCRSPSLYRANH-SGKCACCPACVTLLSENAGCKTYSKGNW-- 257
           GT+  K+HP  + +    C S    R     GKC C P       + A C     GN   
Sbjct: 244 GTSGAKEHPLASVLV---CESNCNQRGECVHGKCHCAPGFTGRTCDEAVCPVVCSGNGVF 300

Query: 258 -GKSCRCLS 281
            G  C C S
Sbjct: 301 SGGICVCKS 309


>AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein.
          Length = 2684

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 4/69 (5%)
 Frame = +3

Query: 87  GTNYCKDHPCTAPIAPRSCRSPSLYRANH-SGKCACCPACVTLLSENAGCKTYSKGNW-- 257
           GT+  K+HP  + +    C S    R     GKC C P       + A C     GN   
Sbjct: 426 GTSGAKEHPLASVLV---CESNCNQRGECVHGKCHCAPGFTGRTCDEAVCPVVCSGNGVF 482

Query: 258 -GKSCRCLS 281
            G  C C S
Sbjct: 483 SGGICVCKS 491


>Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical
           protein T25C12.3 protein.
          Length = 2103

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 13/48 (27%), Positives = 19/48 (39%)
 Frame = +3

Query: 90  TNYCKDHPCTAPIAPRSCRSPSLYRANHSGKCACCPACVTLLSENAGC 233
           T +C   P T P  P SC++  +    ++  C C P        N  C
Sbjct: 776 TGFCSGTP-TTPYPPNSCQNGGVTDPTNNATCICPPGFYGQYCTNIQC 822


>Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical
           protein T25C12.3 protein.
          Length = 2103

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 13/48 (27%), Positives = 19/48 (39%)
 Frame = +3

Query: 90  TNYCKDHPCTAPIAPRSCRSPSLYRANHSGKCACCPACVTLLSENAGC 233
           T +C   P T P  P SC++  +    ++  C C P        N  C
Sbjct: 776 TGFCSGTP-TTPYPPNSCQNGGVTDPTNNATCICPPGFYGQYCTNIQC 822


>Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical
           protein T25C12.3 protein.
          Length = 2103

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 13/48 (27%), Positives = 19/48 (39%)
 Frame = +3

Query: 90  TNYCKDHPCTAPIAPRSCRSPSLYRANHSGKCACCPACVTLLSENAGC 233
           T +C   P T P  P SC++  +    ++  C C P        N  C
Sbjct: 776 TGFCSGTP-TTPYPPNSCQNGGVTDPTNNATCICPPGFYGQYCTNIQC 822


>AL713992-2|CAD29326.2|  317|Caenorhabditis elegans Hypothetical
           protein VY10G11R.1 protein.
          Length = 317

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 232 VKLTVREIGENPAAVCREPLKWLN 303
           +K+T R  G NP A+  EP+ W N
Sbjct: 52  MKMTTRRSG-NPTAIANEPIPWQN 74


>Z70038-7|CAA93886.2|  373|Caenorhabditis elegans Hypothetical
           protein ZK1067.7 protein.
          Length = 373

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
 Frame = +3

Query: 63  IVYGDLVCGTNYCKDH---PCTAPIAPRSCRSPSLYRANHSGKCACCPACVTLLSEN 224
           +V  D  C +N C +     C+ PI  +SC+S        + +  C P+C +  + N
Sbjct: 185 VVQQDNSCSSN-CNNQCSSSCSTPICIQSCQSSCQQACQPTCQPQCMPSCSSSCTSN 240


>Z30662-4|CAA83139.3|  376|Caenorhabditis elegans Hypothetical
           protein T16H12.4 protein.
          Length = 376

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 75  DLVCGTNYCKDHPCTAPIAPRSCRSPSLYRANHSGKCACCPAC-VTLLS 218
           +L+   ++C  HP T PI+ R         A H    A CP C +TL++
Sbjct: 262 ELITTRSFCVCHPDTKPISSRGFICTQC-GARHCSIPAECPVCKLTLVA 309


>U58756-4|AAC48082.1|  291|Caenorhabditis elegans Hypothetical
           protein F58F9.6 protein.
          Length = 291

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 8/78 (10%)
 Frame = +3

Query: 81  VCGTNYCKD----HPCTAPIAP----RSCRSPSLYRANHSGKCACCPACVTLLSENAGCK 236
           +C T  C       PC  P  P    ++ +   L   +      CCP      S +   +
Sbjct: 76  LCNTQTCLPASARRPCCKPYTPLKIKKTMQCGPLPEEDTDTSKPCCPKGGLWSSWSGYIR 135

Query: 237 TYSKGNWGKSCRCLS*TA 290
            Y+   W ++  CLS TA
Sbjct: 136 NYASNGWERTRSCLSGTA 153


>U23452-5|AAK31546.1|  304|Caenorhabditis elegans Hypothetical
           protein R07G3.6 protein.
          Length = 304

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 91  QTIVKIIPALRRSPQGVAVLPRYTEP 168
           +++    P+LRR PQ +  LP  T P
Sbjct: 150 KSLSMFFPSLRRKPQSIPTLPPTTTP 175


>AF000262-10|AAN60530.1|  350|Caenorhabditis elegans Twik family of
           potassium channelsprotein 37 protein.
          Length = 350

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 42  LLACVMTIVYGDLVCGT 92
           ++ C+ TI YG+LVC T
Sbjct: 156 VITCITTIGYGELVCHT 172


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,295,085
Number of Sequences: 27780
Number of extensions: 195654
Number of successful extensions: 542
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)