Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_K12
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces pomb...    75   6e-15
SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces p...    29   0.52 
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    26   4.8  
SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3...    26   4.8  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    25   6.3  

>SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 75.4 bits (177), Expect = 6e-15
 Identities = 36/92 (39%), Positives = 51/92 (55%)
 Frame = +1

Query: 4   SCNPIDGSMFAYPRVEIPAKAQHAAAQLGLSPDEFYCLTLLEETGVCVVPGTGFGQLPGT 183
           SC    G+M+ +P V +P K    A    + PDEFY + LL+ +G+CVVPG+GFGQ  G 
Sbjct: 416 SCLEPHGAMYLHPSVSLPEKLITTAKAQKIQPDEFYAIELLKRSGICVVPGSGFGQPEGD 475

Query: 184 FHFRTTILHPKAEFQHMMDSIRKFHINFMQMY 279
           +H R T L    E+   ++   K H   M +Y
Sbjct: 476 YHIRITFLAKGTEY---IERFVKAHNEIMDLY 504


>SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 202

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +2

Query: 119 RCLRRREYAWSRELGSDSCLE--LSTSEPPYYTR 214
           R  R R+Y WS     +SCL+  LST E  Y TR
Sbjct: 95  RLQRLRQYCWSGGKRMESCLDTSLSTYERDYLTR 128


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -2

Query: 270 HKVNMKLSNRVHHVLKLSLRV*YGGSEVESSRQLSEP 160
           H  + KLSN+V   LKL++   +  S+  SS Q S P
Sbjct: 90  HSSSQKLSNKVSSALKLTIPKRWRSSK-SSSSQCSSP 125


>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 334

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = -1

Query: 226 ETQPSGVIWWF*SGKFQAAVRTQFPGPRILPSPQATLSSRTRRD*GRAVRPRAVPS 59
           +T PS +      GK   +  T   GP I+ SPQ   +S   R  G+    +A+P+
Sbjct: 249 QTNPSSIS----KGKKNNSNNTTQKGPNIISSPQVINASSPVRKAGKKKSKKALPT 300


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 10  NPIDGSMFAYPRVEIPAKAQHAAAQLGL 93
           NP+  S+ A P +E P+   HA A   L
Sbjct: 388 NPVKSSVKALPTLEPPSSPSHATATSSL 415


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,056,616
Number of Sequences: 5004
Number of extensions: 37636
Number of successful extensions: 78
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)