Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_K12
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0060 - 445619-445739,446026-446182,446274-446365,446516-44... 99 3e-21
07_03_1281 - 25439634-25439750,25439868-25440071,25440328-254404... 97 9e-21
10_07_0056 + 12451510-12451554,12453099-12453149,12453754-124538... 95 4e-20
10_07_0057 + 12460986-12461036,12461108-12461161,12461420-124614... 89 2e-18
09_04_0231 + 15875955-15876005,15876141-15876191,15877911-158779... 76 2e-14
03_01_0591 - 4366400-4366558,4366782-4366985,4367078-4367152,436... 68 7e-12
12_02_0692 - 22197582-22198214,22198761-22198935,22199089-221991... 30 1.2
02_05_0197 - 26641356-26642188,26642312-26642398,26643373-266434... 27 8.6
>07_01_0060 -
445619-445739,446026-446182,446274-446365,446516-446580,
447052-447117,447707-447838,448125-448298,449025-449183,
449297-449384,449492-449573,449757-449874,449959-450162
Length = 485
Score = 98.7 bits (235), Expect = 3e-21
Identities = 43/91 (47%), Positives = 60/91 (65%)
Frame = +1
Query: 7 CNPIDGSMFAYPRVEIPAKAQHAAAQLGLSPDEFYCLTLLEETGVCVVPGTGFGQLPGTF 186
CN +G+M+++P++ +P KA AA + G + D FYCL LLE TG+ VPG+GFGQ G F
Sbjct: 389 CNFTEGAMYSFPQIRLPPKAIDAAKRAGKAADVFYCLKLLEATGISTVPGSGFGQKEGVF 448
Query: 187 HFRTTILHPKAEFQHMMDSIRKFHINFMQMY 279
H RTTIL + + +M S +KF+ FM Y
Sbjct: 449 HLRTTILPAEEDMPAIMTSFKKFNDTFMDQY 479
>07_03_1281 -
25439634-25439750,25439868-25440071,25440328-25440402,
25440477-25440631,25440704-25440824,25440946-25441020,
25441216-25441353,25441617-25441727,25441883-25441987,
25442061-25442139,25442488-25442549,25442634-25442699,
25442812-25442907,25443353-25443403,25443629-25443709
Length = 511
Score = 97.1 bits (231), Expect = 9e-21
Identities = 41/92 (44%), Positives = 61/92 (66%)
Frame = +1
Query: 4 SCNPIDGSMFAYPRVEIPAKAQHAAAQLGLSPDEFYCLTLLEETGVCVVPGTGFGQLPGT 183
+CN +G+M+ +PR+ +P KA AA G +PD +Y LLE TG+ VVPG+GFGQ+PGT
Sbjct: 418 TCNKAEGAMYLFPRIYLPQKAIGAAQAAGTAPDAYYARRLLEATGIVVVPGSGFGQVPGT 477
Query: 184 FHFRTTILHPKAEFQHMMDSIRKFHINFMQMY 279
+HFR TIL + + ++ ++FH FM +
Sbjct: 478 WHFRCTILPQEDKIPAIISKFKEFHEKFMDEF 509
>10_07_0056 +
12451510-12451554,12453099-12453149,12453754-12453804,
12453879-12453944,12454011-12454072,12454459-12454537,
12454618-12454722,12454824-12454934,12455017-12455154,
12455298-12455399,12455400-12455474,12455574-12455694,
12455768-12455922,12456004-12456078,12456160-12456363,
12457105-12457221
Length = 518
Score = 95.1 bits (226), Expect = 4e-20
Identities = 41/92 (44%), Positives = 59/92 (64%)
Frame = +1
Query: 4 SCNPIDGSMFAYPRVEIPAKAQHAAAQLGLSPDEFYCLTLLEETGVCVVPGTGFGQLPGT 183
+CN +G+M+ +P++ +P KA AA +PD FY L LLE TG+ VVPG+GFGQ+PGT
Sbjct: 425 TCNKTEGAMYLFPQLSLPQKAIDAAKAANKAPDAFYALRLLEATGIVVVPGSGFGQVPGT 484
Query: 184 FHFRTTILHPKAEFQHMMDSIRKFHINFMQMY 279
+H R TIL + + ++ + FH FM Y
Sbjct: 485 WHIRCTILPQEEKIPAIISRFKAFHEGFMAAY 516
>10_07_0057 +
12460986-12461036,12461108-12461161,12461420-12461482,
12461666-12461716,12461996-12462057,12462156-12462318,
12462829-12462939,12463029-12463166,12463248-12463322,
12463420-12463540,12464827-12464981,12465080-12465154,
12465270-12465473,12465670-12465786
Length = 479
Score = 89.0 bits (211), Expect = 2e-18
Identities = 39/92 (42%), Positives = 57/92 (61%)
Frame = +1
Query: 4 SCNPIDGSMFAYPRVEIPAKAQHAAAQLGLSPDEFYCLTLLEETGVCVVPGTGFGQLPGT 183
+CN +G + +P V +P +A AA + PD FY L LLE TG+ VVPG+ FGQ+PGT
Sbjct: 386 TCNKAEGGISVFPSVRLPPRAIEAAEAMNTEPDVFYALRLLESTGIVVVPGSVFGQVPGT 445
Query: 184 FHFRTTILHPKAEFQHMMDSIRKFHINFMQMY 279
+HFR TIL + + + ++ FH FM+ +
Sbjct: 446 WHFRCTILPQEEKTRQIISRFNVFHEAFMEEF 477
>09_04_0231 +
15875955-15876005,15876141-15876191,15877911-15877976,
15878073-15878134,15878639-15878717,15878839-15878943,
15879032-15879142,15879492-15879629,15879821-15879895,
15880011-15880131,15880196-15880350,15880605-15880679,
15881124-15881327,15881396-15881536
Length = 477
Score = 76.2 bits (179), Expect = 2e-14
Identities = 40/100 (40%), Positives = 57/100 (57%), Gaps = 8/100 (8%)
Frame = +1
Query: 4 SCNPIDGSMFAYPRVEIPAKAQHAAAQLGLSPDEFYCLTLLEETGVCVVPGTGF------ 165
SCN +G+M+ +PR+ +P A AA G+SPD FY LL+ TG+ VVPG+GF
Sbjct: 376 SCNKFEGAMYLFPRLRLPQAAIKAAQLEGVSPDVFYAHRLLDATGIAVVPGSGFHPDLVS 435
Query: 166 --GQLPGTFHFRTTILHPKAEFQHMMDSIRKFHINFMQMY 279
++ GT H R TIL + M+ S++ FH FM +
Sbjct: 436 SCKKVSGTSHIRCTILPGEETITAMVPSLQAFHEAFMDEF 475
>03_01_0591 -
4366400-4366558,4366782-4366985,4367078-4367152,
4367240-4367394,4367476-4367596,4367720-4367794,
4369435-4369572,4369655-4369765,4369844-4369948,
4370327-4370405,4370561-4370622,4370698-4370763,
4370840-4371024,4371095-4371173
Length = 537
Score = 67.7 bits (158), Expect = 7e-12
Identities = 27/57 (47%), Positives = 40/57 (70%)
Frame = +1
Query: 4 SCNPIDGSMFAYPRVEIPAKAQHAAAQLGLSPDEFYCLTLLEETGVCVVPGTGFGQL 174
+CN +G+M+ +PR+ +P KA AA + +PD FY L LL+ TG+ V PG+GFGQ+
Sbjct: 430 TCNKTEGAMYLFPRIYLPQKAIEAARAVNKAPDVFYALRLLDTTGIVVTPGSGFGQI 486
>12_02_0692 - 22197582-22198214,22198761-22198935,22199089-22199185,
22199359-22199473,22199546-22199633,22199972-22200063,
22200138-22200629,22201025-22201048,22201348-22203489
Length = 1285
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = -2
Query: 198 GSEVESSRQLSEPSSRD---HAYSRLLKQR*AVELVGTEAELCGRVLCLRGD 52
G++ ES + ++ SR H Y LLKQ L+ T A+LC +L D
Sbjct: 1009 GAQTESQGRGTDERSRSKRMHIYVSLLKQMAPEHLLATSAKLCAEILAAACD 1060
>02_05_0197 - 26641356-26642188,26642312-26642398,26643373-26643452,
26643948-26644120,26644227-26644308,26644623-26644758,
26644777-26644833,26644905-26645120,26645939-26646335,
26646458-26646544,26647063-26647324,26648892-26648972,
26649176-26650350
Length = 1221
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -1
Query: 178 QAAVRTQFPGPRILPSPQATLSSRTRRD*GRAVRPRAVPSRGSRPAGTR 32
+A R P +P P ++ RT+ + R RP+ P+ G RP +R
Sbjct: 1018 EATPRAMPSTPLAVPLPATAMAQRTQCNLARMPRPQQ-PNCGGRPGSSR 1065
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,910,714
Number of Sequences: 37544
Number of extensions: 252858
Number of successful extensions: 665
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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