Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_K12
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000195-5|AAC24265.2|  504|Caenorhabditis elegans Hypothetical ...   106   1e-23
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>AF000195-5|AAC24265.2|  504|Caenorhabditis elegans Hypothetical
           protein C32F10.8a protein.
          Length = 504

 Score =  106 bits (255), Expect = 1e-23
 Identities = 45/92 (48%), Positives = 60/92 (65%)
 Frame = +1

Query: 4   SCNPIDGSMFAYPRVEIPAKAQHAAAQLGLSPDEFYCLTLLEETGVCVVPGTGFGQLPGT 183
           SCNP+ G+M+A+P++ IP +A   A  L   PD FY + LLE TG+C+VPG+GFGQ  GT
Sbjct: 412 SCNPVQGAMYAFPQITIPQRAVEKAQSLNQQPDFFYAMQLLETTGICIVPGSGFGQKDGT 471

Query: 184 FHFRTTILHPKAEFQHMMDSIRKFHINFMQMY 279
           +HFRTTIL     F+ M+     FH  F+  Y
Sbjct: 472 YHFRTTILPQPELFKDMLSRFTDFHQKFLAEY 503


>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
           protein C01G8.9a protein.
          Length = 1724

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -1

Query: 172 AVRTQFPGPRILPSPQATLSSRTRRD*GRAVRPRAVPSRGSRP 44
           A +   P P   P+PQA  SS+     G   +P A PS  ++P
Sbjct: 575 AQQASTPAPSTTPAPQAASSSQAAPTSGANTQP-ATPSASNQP 616


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,387,739
Number of Sequences: 27780
Number of extensions: 219028
Number of successful extensions: 446
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)