Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_K08
         (517 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    28   0.72 
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    26   3.8  
SPCC576.14 |||diphthine synthase |Schizosaccharomyces pombe|chr ...    25   5.1  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    25   6.7  
SPAC8F11.06 |||nuclear envelope protein |Schizosaccharomyces pom...    25   6.7  

>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 28.3 bits (60), Expect = 0.72
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 515 WSPDISKNVIKVHFTPNVV 459
           W  D + N+IKVHFT +V+
Sbjct: 593 WEMDENANIIKVHFTKSVI 611


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 173 NWIKTLTFFSAQSPC 217
           NW+K+L+FF   S C
Sbjct: 441 NWLKSLSFFQTNSSC 455


>SPCC576.14 |||diphthine synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 283

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 360 YKLNQHYKIILYFENNYRP 304
           YK  Q   ++ +FENNYRP
Sbjct: 125 YKFGQTVSLV-FFENNYRP 142


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 8/36 (22%), Positives = 22/36 (61%)
 Frame = -2

Query: 393  FILILKILLCPYKLNQHYKIILYFENNYRPYVKFVS 286
            ++ +  +++CP+  N H    + F  +YR +++++S
Sbjct: 1446 WVTMFALVICPFIYNPHQFSFVDFFVDYREFLRWLS 1481


>SPAC8F11.06 |||nuclear envelope protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 297

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -2

Query: 192 VSVLIQLLFGVIFKRVHVVYFYKIIFIMQKQRINR 88
           VS  +QL+F      + + + +KI+F +Q    NR
Sbjct: 119 VSGYLQLMFNACVASIFLYFLFKIVFGIQNDVRNR 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,911,374
Number of Sequences: 5004
Number of extensions: 36618
Number of successful extensions: 73
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)