Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_K07
         (368 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug...    32   0.033
SPCC4B3.14 |cwf20||complexed with Cdc5 protein Cwf20 |Schizosacc...    31   0.075
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc...    25   2.8  
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   3.7  
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    25   4.9  
SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation...    24   6.5  
SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces pomb...    24   6.5  

>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
           Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 31.9 bits (69), Expect = 0.033
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = -1

Query: 239 SASASPKTAIAGPALIMPFLMLRPIFSIFLKTFHFGSGA--AETVDKARTR 93
           SA+ S   AIA P +I P   +RP+ S+F+K+      A     +D ART+
Sbjct: 194 SATLSGALAIADPNIISPIDSVRPLLSLFIKSITSAISALILSPLDIARTK 244


>SPCC4B3.14 |cwf20||complexed with Cdc5 protein Cwf20
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 290

 Score = 30.7 bits (66), Expect = 0.075
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -2

Query: 112 STKPEPERTRRKISLRSSSLNIVNFNKRNI 23
           STK  P+R +R++ L+ SS N   FN+ ++
Sbjct: 42  STKKSPKRLKRQVDLQKSSFNDKTFNESDV 71


>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
           Pms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 794

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 142 SISAQAQPKQSTKPEPERTRRKISLRSSSLN 50
           S++  A   Q +KP PER ++    RSS LN
Sbjct: 405 SVAEGASLAQVSKPLPERLQKDSMRRSSPLN 435


>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 94  ERTRRKISLRSSSLNIVNFNKRNIELKIY 8
           +++RRK    SSS+ + N NK +I + IY
Sbjct: 56  KKSRRKNQRNSSSIGLSNPNKFSIYIYIY 84


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 125 AAETVDKARTRANTKKNILEKFIVEY 48
           AAE++ K    + T KN+L  F+V+Y
Sbjct: 17  AAESISKDELYSWTLKNVLILFLVQY 42


>SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation
           factor eIF2 beta subunit|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 321

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -1

Query: 128 GAAETVDKARTRANTKKNILEKFIVEY 48
           G++  + K R +    +N+L ++IVEY
Sbjct: 244 GSSRLIIKGRFQQKQIENVLRRYIVEY 270


>SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 213 DRWSSLDNAVSDVATHFLNFLE 148
           DR++   N V D+ TH LNF+E
Sbjct: 134 DRFAKQTNEV-DINTHLLNFVE 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,029,451
Number of Sequences: 5004
Number of extensions: 14032
Number of successful extensions: 48
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)