Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0007_K07
         (368 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61944-3|AAB03119.1|  818|Caenorhabditis elegans Hypothetical pr...    26   7.3  
AF067216-8|AAN84852.1|  954|Caenorhabditis elegans Hypothetical ...    26   7.3  
AF067216-7|AAC17521.1| 1262|Caenorhabditis elegans Hypothetical ...    26   7.3  
AC006808-1|AAF60813.1|  486|Caenorhabditis elegans Hypothetical ...    26   7.3  
AC006685-2|AAK84573.1|  334|Caenorhabditis elegans Hypothetical ...    26   9.7  

>U61944-3|AAB03119.1|  818|Caenorhabditis elegans Hypothetical
           protein T12E12.3 protein.
          Length = 818

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -2

Query: 178 CCDPFSQFS*RLSISAQAQPK-QSTKPEPERTRRKISLRSSSLNIVNFNKRNIELKIYM 5
           C   FS+FS   +I    +    +T PEPER+R+ ++     + I +  ++ I   +Y+
Sbjct: 115 CLQKFSEFSAPETIPETLEETVPATAPEPERSRKLVNRMPLDVEISDSFEKLIWNHVYL 173


>AF067216-8|AAN84852.1|  954|Caenorhabditis elegans Hypothetical
           protein C35E7.5b protein.
          Length = 954

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -2

Query: 175 CDPFSQFS*RLSISAQAQPKQSTKPEPERTRRKISLRSSSLNIVNFNKRNI 23
           CD  S+ S   SI +      ST P  +     +S +  SLNI+ F   N+
Sbjct: 776 CDHCSKSSLNHSIPSLQNVITSTSPYTDNAVILVSSKDRSLNILGFRSNNM 826


>AF067216-7|AAC17521.1| 1262|Caenorhabditis elegans Hypothetical
           protein C35E7.5a protein.
          Length = 1262

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -2

Query: 175 CDPFSQFS*RLSISAQAQPKQSTKPEPERTRRKISLRSSSLNIVNFNKRNI 23
           CD  S+ S   SI +      ST P  +     +S +  SLNI+ F   N+
Sbjct: 776 CDHCSKSSLNHSIPSLQNVITSTSPYTDNAVILVSSKDRSLNILGFRSNNM 826


>AC006808-1|AAF60813.1|  486|Caenorhabditis elegans Hypothetical
           protein Y58G8A.1 protein.
          Length = 486

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 182 LMLRPIFSIFLKTFHFGSGAAETVDKARTRANTKKNILEK 63
           ++LR I    L  FHFG+ A+++ D+ +  A   K    K
Sbjct: 2   ILLRLISIGVLINFHFGNAASQSTDERKLEAQLLKGYNSK 41


>AC006685-2|AAK84573.1|  334|Caenorhabditis elegans Hypothetical
           protein T13G4.4 protein.
          Length = 334

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 146 TFHFGSGAAETVDKARTRANTKKNILEKFIVEYC 45
           T+HFGS    T+DK       K+ + EK+  E C
Sbjct: 123 TYHFGS----TLDKTIPENAEKRELYEKYFEETC 152


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,655,472
Number of Sequences: 27780
Number of extensions: 79692
Number of successful extensions: 241
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)