Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0007_K06
(368 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc... 94 5e-21
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha... 73 1e-14
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c... 71 4e-14
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac... 69 3e-13
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po... 62 3e-11
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ... 55 3e-09
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po... 43 2e-05
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ... 32 0.033
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch... 31 0.075
SPCC16A11.05c |dim1||U4/U6 x U5 tri-snRNP complex subunit Dim1|S... 29 0.30
SPBC3D6.06c |||ribose-phosphate pyrophosphokinase |Schizosacchar... 28 0.40
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc... 27 0.70
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 26 1.6
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 25 2.8
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 25 2.8
SPAC11D3.09 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Manual 25 3.7
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 25 3.7
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr... 25 4.9
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 25 4.9
SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase Prs1|Schizo... 25 4.9
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp... 25 4.9
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo... 24 6.5
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ... 24 8.6
SPCC4G3.17 |||HD domain|Schizosaccharomyces pombe|chr 3|||Manual 24 8.6
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 24 8.6
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo... 24 8.6
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 24 8.6
>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 103
Score = 94.3 bits (224), Expect = 5e-21
Identities = 46/98 (46%), Positives = 64/98 (65%)
Frame = +3
Query: 66 IKDFDDLKTRLSEAGDKLVVIDFMATWCGPCKMIGPKLDEMANEMSDSIVVLKVDVDECE 245
+ D + K+ + + DKLVV+DF ATWCGPCK I PK ++ +N SD+ +KVDVD+
Sbjct: 5 VSDSSEFKSIVCQ--DKLVVVDFFATWCGPCKAIAPKFEQFSNTYSDA-TFIKVDVDQLS 61
Query: 246 DIAAEYDISAMPTFVFVKATKKLEEFSGANVDKLMNTI 359
+IAAE + AMP+F K +K+EE GAN KL +I
Sbjct: 62 EIAAEAGVHAMPSFFLYKNGEKIEEIVGANPAKLEASI 99
>SPBC12D12.07c |trx2||mitochondrial thioredoxin
Trx2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 73.3 bits (172), Expect = 1e-14
Identities = 35/100 (35%), Positives = 59/100 (59%)
Frame = +3
Query: 66 IKDFDDLKTRLSEAGDKLVVIDFMATWCGPCKMIGPKLDEMANEMSDSIVVLKVDVDECE 245
++ F D TR+S DK+ V+DF A WCGPCK + P L+++ +E + + V+ D+
Sbjct: 22 VESFGDYNTRIS--ADKVTVVDFYADWCGPCKYLKPFLEKL-SEQNQKASFIAVNADKFS 78
Query: 246 DIAAEYDISAMPTFVFVKATKKLEEFSGANVDKLMNTILK 365
DIA + + A+PT V + ++L+ GA+V L + + K
Sbjct: 79 DIAQKNGVYALPTMVLFRKGQELDRIVGADVKTLSSLLAK 118
>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 71.3 bits (167), Expect = 4e-14
Identities = 32/102 (31%), Positives = 56/102 (54%)
Frame = +3
Query: 54 MSIHIKDFDDLKTRLSEAGDKLVVIDFMATWCGPCKMIGPKLDEMANEMSDSIVVLKVDV 233
MS+ I + + L +++++++F A W PCK + D+ A + ++ V LK++
Sbjct: 1 MSVEITFVEQFQEILQNGKEQIILLNFYAPWAAPCKQMNQVFDQFAKDTKNA-VFLKIEA 59
Query: 234 DECEDIAAEYDISAMPTFVFVKATKKLEEFSGANVDKLMNTI 359
++ DIA +D++A+P FV + K L SGAN KL I
Sbjct: 60 EKFSDIAESFDVNAVPLFVLIHGAKVLARISGANPQKLKAAI 101
>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
Txl1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 290
Score = 68.5 bits (160), Expect = 3e-13
Identities = 35/101 (34%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Frame = +3
Query: 60 IHIKDFDDLKTRLSEAGDKLVVIDFMATWCGPCKMIGPKLDEMANEM-SDSIVVLKVDVD 236
I I+ + + + ++G + +D A WCGPCK I P ++A++ S V KV+VD
Sbjct: 4 IEIRSYQHWISTIPKSG--YLAVDCYADWCGPCKAISPLFSQLASKYASPKFVFAKVNVD 61
Query: 237 ECEDIAAEYDISAMPTFVFVKATKKLEEFSGANVDKLMNTI 359
E IA+ + AMPTFVF + K+++ +GAN L +
Sbjct: 62 EQRQIASGLGVKAMPTFVFFENGKQIDMLTGANPQALKEKV 102
>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 62.1 bits (144), Expect = 3e-11
Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Frame = +3
Query: 111 DKLVVIDFMATWCGPCKMIGPKLDEMANEM-SDSIVVLKVDVDECEDIAAEYDISAMPTF 287
DK++++ F A WCG CK + P+ + A+E+ D I +++VD E D+ +EY I PT
Sbjct: 39 DKVLMVKFYAPWCGHCKALAPEYESAADELEKDGISLVEVDCTEEGDLCSEYSIRGYPTL 98
Query: 288 VFVKATKKLEEFSG 329
K K++ ++SG
Sbjct: 99 NVFKNGKQISQYSG 112
Score = 56.8 bits (131), Expect = 1e-09
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Frame = +3
Query: 72 DFDDLKTRLSEAGDKLVVIDFMATWCGPCKMIGPKLDEMANEMSD--SIVVLKVDVDECE 245
+FDD+ + E D V+++F A WCG CK + P +++A E SD ++VV K+D E
Sbjct: 364 NFDDIV--MDETKD--VLVEFYAPWCGHCKNLAPTYEKLAEEYSDDSNVVVAKIDATE-N 418
Query: 246 DIAAEYDISAMPTFVFVKATKKL 314
DI+ IS PT +F KA K+
Sbjct: 419 DISV--SISGFPTIMFFKANDKV 439
>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 359
Score = 55.2 bits (127), Expect = 3e-09
Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Frame = +3
Query: 60 IHIKDFDDLKTRLSEAGDKLVVIDFMATWCGPCKMIGPKLDEMANEMSD--SIVVLKVDV 233
+ ++ ++L+ + A K +I+F ATWCG CK + P +E+ D +++ K+D
Sbjct: 23 VELQSLNELENTI-RASKKGALIEFYATWCGHCKSLAPVYEELGALFEDHNDVLIGKIDA 81
Query: 234 DECEDIAAEYDISAMPTFVF 293
D D+A +Y I+ PT ++
Sbjct: 82 DTHSDVADKYHITGFPTLIW 101
Score = 43.6 bits (98), Expect = 1e-05
Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Frame = +3
Query: 114 KLVVIDFMATWCGPCKMIGPKLDEMANEMSD--SIVVLKVDVDECEDIAAEYDISAMPTF 287
K V+++F A WCG CK + P + + + ++ ++K++ D DI +++++ PT
Sbjct: 159 KDVLVEFYADWCGYCKRLAPTYETLGKVFKNEPNVEIVKINADVFADIGRLHEVASFPTI 218
Query: 288 VF 293
F
Sbjct: 219 KF 220
>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 363
Score = 42.7 bits (96), Expect = 2e-05
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +3
Query: 108 GDKLVVIDFMATWCGPCKMIGPKLDEMANEMSDSIVVLKVDVDECED--IAAEYDISAMP 281
G LVV F A WCG CK + P ++A+ + + V VD D ++ + ++Y + P
Sbjct: 49 GPSLVV--FYAPWCGYCKKLVPTYQKLASNLHSLLPVTAVDCDADQNRAVCSQYQVQGFP 106
Query: 282 TFVFVKATKKLEEFSGAN 335
T V + K S +
Sbjct: 107 TIKLVYPSSKGSSLSSTD 124
>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 726
Score = 31.9 bits (69), Expect = 0.033
Identities = 16/58 (27%), Positives = 25/58 (43%)
Frame = +3
Query: 126 IDFMATWCGPCKMIGPKLDEMANEMSDSIVVLKVDVDECEDIAAEYDISAMPTFVFVK 299
I F ++ C C + MAN M + V ++ + +Y I PTF+F K
Sbjct: 303 IQFYSSECDDCDDVSTAWYAMANRMRGKLNVAHINCAVSKRACKQYSIQYFPTFLFFK 360
Score = 30.7 bits (66), Expect = 0.075
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Frame = +3
Query: 99 SEAGDKLVVIDFMATWCGPCKMIGPKLDEMANEMSDSIVVLKV---DVDECEDIAAEYDI 269
SE I + CG CK +GP D M + + + +VD +++++ +I
Sbjct: 38 SEVSKGTWFIKYYLPSCGACKRLGPMWDNMVEKAKEQVEGSNFHFGEVDCSKELSSCANI 97
Query: 270 SAMPTFVFVKATKKLEE 320
A+PT + + +EE
Sbjct: 98 RAVPTLYLYQNGEIVEE 114
>SPBC215.08c |arg4||carbamoyl-phosphate synthase
Arg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1160
Score = 30.7 bits (66), Expect = 0.075
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = +3
Query: 33 YLFKWYKMSIHIKDFDDLKTRLSEAGDKLVVIDFMATWCG-PCKMIGPKLDEMANEMSDS 209
YL+ Y S H DF++ T + +G + WCG C KL ++ +
Sbjct: 612 YLYTSYNASSHDIDFNEHGTMVLGSGVYRIGSSVEFDWCGVSCARTLRKLGHSTIMVNYN 671
Query: 210 IVVLKVDVDECEDIAAE 260
+ D DECE + E
Sbjct: 672 PETVSTDFDECERLYFE 688
>SPCC16A11.05c |dim1||U4/U6 x U5 tri-snRNP complex subunit
Dim1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 142
Score = 28.7 bits (61), Expect = 0.30
Identities = 21/73 (28%), Positives = 33/73 (45%)
Frame = +3
Query: 96 LSEAGDKLVVIDFMATWCGPCKMIGPKLDEMANEMSDSIVVLKVDVDECEDIAAEYDISA 275
LSE ++LVVI F C L +A ++ + V+ VD+DE D Y++
Sbjct: 19 LSEQ-ERLVVIRFGRDHDEECIKQDEVLYRIAEKVVNMAVIYLVDIDEVPDFNKMYELYD 77
Query: 276 MPTFVFVKATKKL 314
T +F K +
Sbjct: 78 RTTIMFFYRNKHM 90
>SPBC3D6.06c |||ribose-phosphate pyrophosphokinase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 341
Score = 28.3 bits (60), Expect = 0.40
Identities = 11/58 (18%), Positives = 31/58 (53%)
Frame = +3
Query: 189 ANEMSDSIVVLKVDVDECEDIAAEYDISAMPTFVFVKATKKLEEFSGANVDKLMNTIL 362
+ +++D ++ L + + C+ +A+ + +P F + + + FSGA + L + ++
Sbjct: 60 SGQVNDHLMELLIMISACKTASAKKVTAVLPVFPYSRQPDQKFSFSGAPLSDLQDAVV 117
>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 899
Score = 27.5 bits (58), Expect = 0.70
Identities = 13/62 (20%), Positives = 31/62 (50%)
Frame = -1
Query: 359 DGVHEFVDVRAGELFEFLGRLNKHESRHRADVIFGGDVFAFVNVDLKNNNGVGHFVSHLV 180
DGV++ ++ ++ +GR ++ AD+I D FA + ++ G+ + + + +
Sbjct: 627 DGVNDAPALKLADIGIAMGRQGTDVAKEAADMILTDDSFATILSAVEEGKGIFNNIKNFI 686
Query: 179 EF 174
F
Sbjct: 687 TF 688
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 26.2 bits (55), Expect = 1.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 364 FKMVFMSLSTFAPENSSSFLVALTNTK 284
+K ++ SLS F ENS ++ L TK
Sbjct: 1159 YKPIYFSLSDFLKENSDEIILVLILTK 1185
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 25.4 bits (53), Expect = 2.8
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = -3
Query: 114 CRPPPTAWSSSHRSP*CGSTFCTI*IGKQLNRP 16
CR P T + H CG FC K L+ P
Sbjct: 179 CRTPFTFTNRKHHCRNCGGVFCNQCSSKTLSLP 211
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 25.4 bits (53), Expect = 2.8
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Frame = +3
Query: 33 YLFKWYKMSIHIKDFDDLKTRLSEAGDKLVVIDFMATWCGPCKMIGPKLDEMANEMSDSI 212
+L+ W K+ +K + K S DK+V F+ W K I L + + ++
Sbjct: 744 FLYIWSKLQQSVKITEPFKRSSSNVHDKIV---FLEVW----KSIMAALIYVFSTATEDT 796
Query: 213 VVLKV--DVDECEDIAAEYDIS 272
V +V + + ++AA Y+++
Sbjct: 797 VFYRVVNGIQQATEVAAAYELN 818
>SPAC11D3.09 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 25.0 bits (52), Expect = 3.7
Identities = 13/38 (34%), Positives = 15/38 (39%)
Frame = -1
Query: 200 HFVSHLVEFGPDHLAGSAPSRHEVNHDELVARLRQPGL 87
HF SHL + P G S +NH Q GL
Sbjct: 207 HFDSHLDSWKPKVFGGGKSSVGSINHGTYFYHASQEGL 244
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 25.0 bits (52), Expect = 3.7
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +3
Query: 87 KTRLSEAGDKLVVI---DFMATWCGPCKMIGPKLDEMANEMSDSIVVL 221
K +EAG I D ++ W G + + +L EMA E SI+ +
Sbjct: 180 KAVATEAGSTFFSISSSDLVSKWMGESERLVRQLFEMAREQKPSIIFI 227
>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 905
Score = 24.6 bits (51), Expect = 4.9
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +3
Query: 78 DDLKTRLSEAGDKLVVIDFMATWCGPCKMIGPKLDEMANEMSDSIV 215
D + RL EAG + +A CGPC + + D++A+ ++I+
Sbjct: 433 DGITERLEEAGATV-----LANACGPCIGMWKRTDDIASGEPNAIL 473
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 24.6 bits (51), Expect = 4.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -1
Query: 356 GVHEFVDVRAGELFEF 309
G+HEF D + G +F F
Sbjct: 507 GIHEFADSQFGHIFSF 522
>SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase
Prs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 24.6 bits (51), Expect = 4.9
Identities = 13/62 (20%), Positives = 34/62 (54%)
Frame = +3
Query: 177 LDEMANEMSDSIVVLKVDVDECEDIAAEYDISAMPTFVFVKATKKLEEFSGANVDKLMNT 356
L ++ ++DS++ L + + C+ +A+ + MP F + K + K+ ++ A +++
Sbjct: 56 LQSGSSTVNDSLMELLIIISACKGGSAKRITAVMPYFPYSKQS-KMRKYRDAITARMVAN 114
Query: 357 IL 362
+L
Sbjct: 115 LL 116
>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
beta subunit Qcr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 457
Score = 24.6 bits (51), Expect = 4.9
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -1
Query: 290 HESRHRADVIFGGDVFAFVNVDLKNNNGVGHFVSHL 183
H A V+ G D A + NNG HF+ HL
Sbjct: 38 HPYAQTATVLVGVD--AGSRAETAKNNGAAHFLEHL 71
>SPBC1773.09c |mug184||meiotically upregulated gene
Mug184|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 24.2 bits (50), Expect = 6.5
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +3
Query: 234 DECEDIAAEYDISAMPTFVFVKATKKL 314
D+CE+ AE+ + F+F+K ++L
Sbjct: 518 DQCEEFVAEFRQTEEKYFLFLKRLREL 544
>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 846
Score = 23.8 bits (49), Expect = 8.6
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -1
Query: 188 HLVEFGP-DHLAGSAPSRHEVNHDELVARLRQPGLQVIEVLD 66
H E G DHLA + H +NH L+ ++ P LQ + LD
Sbjct: 602 HCGEAGDTDHLASAFLLSHGINHGILLRKV--PFLQYLWYLD 641
>SPCC4G3.17 |||HD domain|Schizosaccharomyces pombe|chr 3|||Manual
Length = 198
Score = 23.8 bits (49), Expect = 8.6
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +3
Query: 219 LKVDVDECEDIAAEYDISAMPTFVFVKATKKLE 317
L + +E +++ EY+ ++ P FVK K E
Sbjct: 110 LSLQAEEIKELFLEYESASTPEAKFVKDIDKFE 142
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 23.8 bits (49), Expect = 8.6
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 166 SGPNSTRWLTKCPTPLLFLRSTLTNAKTSPP 258
S NST + TPL + ST T + +S P
Sbjct: 293 SSANSTTATSASSTPLTSVNSTTTTSASSTP 323
>SPBC19G7.10c |||topoisomerase associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 744
Score = 23.8 bits (49), Expect = 8.6
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +3
Query: 75 FDDLKTRLSEAGDKL 119
+DDL +L+EAGD+L
Sbjct: 33 YDDLGNQLNEAGDEL 47
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 23.8 bits (49), Expect = 8.6
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 33 YLFKWYKMSIHIKDFDDLKTRLSE 104
YL +W+ IH+ ++L+ LSE
Sbjct: 2363 YLMQWFASVIHVFSGEELQPVLSE 2386
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,337,284
Number of Sequences: 5004
Number of extensions: 24228
Number of successful extensions: 127
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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